Browse Element(s) Details


OsAffx.17130.1.S1_at

Description tigr:9636.m02400
TID=OsAffx.17130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2451011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24480OsAffx.29329.2.S1_x_at11/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_x_at5/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24480OsAffx.29329.1.S1_at1/118+14654116..14656554hAT family dimerisation domain containing protein
LOC_Os08g24490OsAffx.8980.1.S1_at3/118+14661120..14662622retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24500Os.27639.1.S1_x_at3/118+14663513..14665285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24510OsAffx.17130.1.S1_at11/118+14670359..14670574hypothetical protein
LOC_Os08g24520NANA8+14673807..14676712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24530OsAffx.22896.1.S1_x_at1/118+14680789..14684535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24530OsAffx.940.1.S1_x_at1/118+14680789..14684535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24540Os.24831.3.S1_s_at10/118+14685623..14689516retrotransposon protein, putative, unclassified
LOC_Os08g24540Os.24831.1.S1_x_at7/118+14685623..14689516retrotransposon protein, putative, unclassified
LOC_Os08g24540Os.24831.3.S1_x_at4/118+14685623..14689516retrotransposon protein, putative, unclassified
LOC_Os08g24540Os.53142.1.S1_at2/118+14685623..14689516retrotransposon protein, putative, unclassified
LOC_Os08g24540Os.24831.4.S1_x_at1/118+14685623..14689516retrotransposon protein, putative, unclassified
LOC_Os08g24550NANA8+14694539..14697223retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17130.1.S1_at--535--9551Chr08:14670392..14670416 (25 bp)
TCTTTCCTGCCGAGCACCGTGCTTG
LOC_Os08g24510
OsAffx.17130.1.S1_at--7--5951Chr08:14670403..14670427 (25 bp)
GAGCACCGTGCTTGGCTACTCCGGC
LOC_Os08g24510
OsAffx.17130.1.S1_at--189--4471Chr08:14670435..14670459 (25 bp)
GCCTCCTGGACTCCTACTACAGGTA
LOC_Os08g24510
OsAffx.17130.1.S1_at--1157--3891Chr08:14670440..14670464 (25 bp)
CTGGACTCCTACTACAGGTACGTAA
LOC_Os08g24510
OsAffx.17130.1.S1_at--524--5651Chr08:14670443..14670467 (25 bp)
GACTCCTACTACAGGTACGTAACGC
LOC_Os08g24510
OsAffx.17130.1.S1_at--139--9251Chr08:14670446..14670470 (25 bp)
TCCTACTACAGGTACGTAACGCACG
LOC_Os08g24510
OsAffx.17130.1.S1_at--113--9871Chr08:14670452..14670476 (25 bp)
TACAGGTACGTAACGCACGGGATCT
LOC_Os08g24510
OsAffx.17130.1.S1_at--582--7771Chr08:14670456..14670480 (25 bp)
GGTACGTAACGCACGGGATCTACGC
LOC_Os08g24510
OsAffx.17130.1.S1_at--473--7051Chr08:14670461..14670485 (25 bp)
GTAACGCACGGGATCTACGCCTTCT
LOC_Os08g24510
OsAffx.17130.1.S1_at--1020--4611Chr08:14670488..14670512 (25 bp)
GCGAGGCTGACCTTCGCCGAGATCG
LOC_Os08g24510
OsAffx.17130.1.S1_at--86--8451Chr08:14670520..14670544 (25 bp)
GGCCAAGAAGCCAGGCGTCCTGGGC
LOC_Os08g24510
Target Sequence
TCTTTCCTGCCGAGCACCGTGCTTGGCTACTCCGGCGAGCCACGCCTCCTGGACTCCTACTACAGGTACGTAACGCACGG
GATCTACGCCTTCTCCGCGAGGCTGACCTTCGCCGAGATCGAGGATCTGGCCAAGAAGCCAGGCGTCCTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis