Browse Element(s) Details


OsAffx.23429.1.S1_at

Description tigr:9629.m02715
TID=OsAffx.23429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2836011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340Os.45173.1.S1_x_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340OsAffx.21789.1.S1_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28350NANA1+16208088..16208372hypothetical protein
LOC_Os01g28360OsAffx.23429.1.S1_at11/111+16209612..16212549hypothetical protein
LOC_Os01g28370Os.46306.1.S1_x_at6/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.8338.1.S1_x_at5/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_x_at4/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_at2/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.19498.1.S1_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.10020.1.S1_x_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28380NANA1+16230483..16232511hypothetical protein
LOC_Os01g28390Os.14491.2.S1_x_at4/111+16233118..16242007transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28390Os.47463.1.S1_x_at4/111+16233118..16242007transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23429.1.S1_at--1071--9211Chr01:16211281..16211305 (25 bp)
TCCACTACCTGTTGGGTATCGCTGA
LOC_Os01g28360
OsAffx.23429.1.S1_at--385--6911Chr01:16211266..16211290 (25 bp)
GTATCGCTGAGGATATCCCGGTGAA
LOC_Os01g28360
OsAffx.23429.1.S1_at--583--191Chr01:16211233..16211257 (25 bp)
ATTTCTTCGTCCATGTTGACTTTGT
LOC_Os01g28360
OsAffx.23429.1.S1_at--578--8531Chr01:16211197..16211221 (25 bp)
TGGACTCCAATAAAGACATGCCGCT
LOC_Os01g28360
OsAffx.23429.1.S1_at--156--5951Chr01:16211151..16211175 (25 bp)
GAGCACCGCAGAGACGAACATTGAT
LOC_Os01g28360
OsAffx.23429.1.S1_at--1098--3031Chr01:16211112..16211136 (25 bp)
AATCCGGCTCCGCATCAATGGAAAG
LOC_Os01g28360
OsAffx.23429.1.S1_at--792--9092Chr06:16175598..16175760 (25 bp)
TGCTCCATGGTGTTGGTATTTCATA
NONE
OsAffx.23429.1.S1_at--280--7651Chr01:16209826..16209850 (25 bp)
GGGAGGAGCACTGCCTTGTTCCTAA
LOC_Os01g28360
OsAffx.23429.1.S1_at--325--7271Chr01:16209792..16209816 (25 bp)
GTCCTTCTTGTCTAGATACAGGGCG
LOC_Os01g28360
OsAffx.23429.1.S1_at--893--4431Chr01:16209742..16209766 (25 bp)
GCCTTATCCTCTGCGTGTACAAGAA
LOC_Os01g28360
OsAffx.23429.1.S1_at--229--9271Chr01:16209658..16209682 (25 bp)
TCCTGCCCAAGATCGACCGTGTGAA
LOC_Os01g28360
Target Sequence 
TCCACTACCTGTTGGGTATCGCTGAGGATATCCCGGTGAAGATCCGGGATTTCTTCGTCCATGTTGACTTTGTGGTGCTG
GATATGGACTCCAATAAAGACATGCCGCTCATCCTTGGGCATCCATTCCTGAGCACCGCAGAGACGAACATTGATGTGGG
AGCTAGAGAAATCCGGCTCCGCATCAATGGAAAGGAGGAGAAATTCGAGTTCCGGCCGAAAATGGAGCAATGCTCCATGG
TGTTGGTATTTCATAAGGACATTACTAGAAATATGAATTCCCAGCAATGGCGCAGAAATAGTCCTGCATTGAAGGCAGAG
AAGAACAAAGACGAAGAGGGGGAGGAGCACTGCCTTGTTCCTAACCCTTCCTTGTCCTTCTTGTCTAGATACAGGGCGAT
CTTTCCCAAGGATTGCTGCAATGGCCTTATCCTCTGCGTGTACAAGAATTATACGAGAGATGAATCCGACTACGTGGTCT
ACAACCCTGCCACTCAGAGATGGATCATCCTGCCCAAGATCGACCGTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis