Browse Element(s) Details


OsAffx.642.2.A1_at

Description tigr:9629.m02711
TID=OsAffx.642.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2832011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28280OsAffx.24606.1.S1_at11/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_x_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28290OsAffx.23428.1.S1_at1/111+16173091..16174560hypothetical protein
LOC_Os01g28300Os.25470.1.S1_at9/111+16180024..16181414F-box domain containing protein, expressed
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340Os.45173.1.S1_x_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340OsAffx.21789.1.S1_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28350NANA1+16208088..16208372hypothetical protein
LOC_Os01g28360OsAffx.23429.1.S1_at11/111+16209612..16212549hypothetical protein
LOC_Os01g28370Os.46306.1.S1_x_at6/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.8338.1.S1_x_at5/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_x_at4/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370Os.45976.1.S1_at2/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.19498.1.S1_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28370OsAffx.10020.1.S1_x_at1/111+16213428..16227548transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.642.2.A1_at--461--811Chr01:16190286..16190656 (25 bp)
ATGGGTCAGCCGACGCAGCTATGAA
LOC_Os01g28320
OsAffx.642.2.A1_at--276--2731Chr01:16190263..16190287 (25 bp)
AAGAATAGAATTTTGGGCTTGTTCA
LOC_Os01g28320
OsAffx.642.2.A1_at--561--3231Chr01:16190206..16190230 (25 bp)
CAAGACGAGTCGAGCACACACTCCT
LOC_Os01g28320
OsAffx.642.2.A1_at--1068--2171Chr01:16190189..16190213 (25 bp)
ACACTCCTCCACTGGTGTATCCATG
LOC_Os01g28320
OsAffx.642.2.A1_at--212--2551Chr01:16190131..16190155 (25 bp)
AACTCCAATCTCGACCACATAGGTG
LOC_Os01g28320
OsAffx.642.2.A1_at--952--3131Chr01:16190126..16190150 (25 bp)
CAATCTCGACCACATAGGTGACCGA
LOC_Os01g28320
OsAffx.642.2.A1_at--1090--1771Chr01:16190106..16190130 (25 bp)
ACCGAGAGATGCAAGTCTGTCACAT
LOC_Os01g28320
OsAffx.642.2.A1_at--612--3511Chr01:16190084..16190108 (25 bp)
CATGATCAAGGATCGGACGTTTGCT
LOC_Os01g28320
OsAffx.642.2.A1_at--54--10731Chr01:16190064..16190088 (25 bp)
TTGCTCATACCCAAGCATATGACCC
LOC_Os01g28320
OsAffx.642.2.A1_at--920--4371Chr01:16190054..16190078 (25 bp)
CCAAGCATATGACCCGAACCTTATT
LOC_Os01g28320
OsAffx.642.2.A1_at--713--5811Chr01:16190044..16190068 (25 bp)
GACCCGAACCTTATTCAGAAAATAG
LOC_Os01g28320
Target Sequence 
ATGGGTCAGCCGACGCAGCTATGAAGAATAGAATTTTGGGCTTGTTCAAGAAGGGATCAAGCTCAAGATCAAGCCATCAC
CAAGACGAGTCGAGCACACACTCCTCCACTGGTGTATCCATGGAGGAGGTGGACGCTACGCTGAGGCTCCTCGACAACTC
CAATCTCGACCACATAGGTGACCGAGAGATGCAAGTCTGTCACATGATCAAGGATCGGACGTTTGCTCATACCCAAGCAT
ATGACCCGAACCTTATTCAGAAAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.642.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis