Browse Element(s) Details


Os.25470.1.S1_at

Description gb:CA765203
DB_XREF= gi:27547074
DB_XREF=AF53-Rpf_06_J19_T7_070.ab1
CLONE=C0002155
TID=Os.25470.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.25470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.14 (B1096D03.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g283009/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28260OsAffx.21121.1.S1_x_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28260OsAffx.21121.2.S1_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28280OsAffx.24606.1.S1_at11/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_x_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28290OsAffx.23428.1.S1_at1/111+16173091..16174560hypothetical protein
LOC_Os01g28300Os.25470.1.S1_at9/111+16180024..16181414F-box domain containing protein, expressed
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340Os.45173.1.S1_x_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28340OsAffx.21789.1.S1_at2/111+16202678..16204780retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25470.1.S1_at--527--7711Chr01:16180826..16180850 (25 bp)
GGGTGCTACACTATGTGCAGCCCGA
LOC_Os01g28300
Os.25470.1.S1_at--938--2711Chr01:16180915..16180939 (25 bp)
AAGCACCGTCTCAGCATGAGCGATG
LOC_Os01g28300
Os.25470.1.S1_at--770--1331Chr01:16181021..16181045 (25 bp)
AGAGAGGGCTTGTTTTCCTTTGTCA
LOC_Os01g28300
Os.25470.1.S1_at--681--10391Chr01:16181033..16181057 (25 bp)
TTTTCCTTTGTCATTTCGCAGCAGA
LOC_Os01g28300
Os.25470.1.S1_at--888--9271Chr01:16181102..16181126 (25 bp)
TCCGAGATGGTCTCAGGCGATACCT
LOC_Os01g28300
Os.25470.1.S1_at--487--6491Chr01:16181120..16181144 (25 bp)
GATACCTGTACTATGTGCCGAACTG
LOC_Os01g28300
Os.25470.1.S1_at--492--2551Chr01:16181140..16181164 (25 bp)
AACTGCTCAATGTTCCCAGCCAAAG
LOC_Os01g28300
Os.25470.1.S1_at--632--1371NONE
AGAGCCATAACTACCATCCCTTATT
NONE
Os.25470.1.S1_at--885--511Chr01:16181205..16181229 (25 bp)
ATCCCTTATTTGATGGAGCCCCGAA
LOC_Os01g28300
Os.25470.1.S1_at--209--5871NONE
GAGCCCCGAACACCGTTATGTAGTA
NONE
Os.25470.1.S1_at--402--1691Chr01:16181356..16181380 (25 bp)
AGCCTTGTTGGTTTCAGCGTTTCAT
LOC_Os01g28300
Target Sequence 
GGGTGCTACACTATGTGCAGCCCGACACCGGTGGTCGCACGCTTCTAGTCTGGGCTCGAGATGGCTNTCCTCACGGTNAC
TGGAATTTGAAGCACCGTCTCAGCATGAGCGATGCATTTGGGCAGNATATCTTTCTTGATGAGCATTTTGATGGATTCNT
GTCTTGTCATTACGACATNNNATCTCTTGACTTGGAGAGAGGGCTTGTTTTCCTTTGTCATTTCGCAGCAGAAAGACTNC
TNTCCTATAGCTTGAGCACAGGGAAGCTGACGAAAATCCGAGATGGTCTCAGGCGATACCTGTACTATGTGCCGAACTGC
TCAATGTTCCCAGCCAAAGAAACCGANAAAGATCAAGATGTATCAGAGCCATAACTACCATCCCTTATTTGATGGAGCCC
CGAACACCGTTATGTAGTAGTTTGCAATAATACTAAATAATTTTGTTGGTGAAGTTTTATATGTAATCTCATATATGGTA
TATGATAGTAGAACTATGTGTGTGAAAGTCGTCTGTTGTGGACAGATGCCAGCCTTGTTGGTTTCAGCGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis