Browse Element(s) Details


OsAffx.24606.1.S1_at

Description gb:NM_193907.1
DB_XREF= gi:34914897
GEN=B1096D03.12
TID=OsAffx.24606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.12 (B1096D03.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28260OsAffx.21121.1.S1_x_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28260OsAffx.21121.2.S1_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28280OsAffx.24606.1.S1_at11/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_x_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28290OsAffx.23428.1.S1_at1/111+16173091..16174560hypothetical protein
LOC_Os01g28300Os.25470.1.S1_at9/111+16180024..16181414F-box domain containing protein, expressed
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24606.1.S1_at--328--3491Chr01:16170525..16170549 (25 bp)
CAGGCTGCCGTTGGCGCTCGACGTG
LOC_Os01g28280
OsAffx.24606.1.S1_at--413--891Chr01:16170489..16170513 (25 bp)
AGGCGTAGGCATGTTTGTTGCTTCC
LOC_Os01g28280
OsAffx.24606.1.S1_at--208--752Chr07:9405165..9405184 (20 bp)
ATGTTTGTTGCTTCCTGTGCTGCCG
NONE
OsAffx.24606.1.S1_at--18--4151Chr01:16170444..16170468 (25 bp)
CGCGTTGTCGGCGACCGGGCACATT
LOC_Os01g28280
OsAffx.24606.1.S1_at--502--5831Chr01:16170432..16170456 (25 bp)
GACCGGGCACATTCTTGCATGCTTG
LOC_Os01g28280
OsAffx.24606.1.S1_at--478--1511Chr01:16170392..16170416 (25 bp)
AGCAGAAGGGACAGCTCGGCCAGGG
LOC_Os01g28280
OsAffx.24606.1.S1_at--536--912Chr04:5568550..5568580 (24 bp)
AGGCTTGTGGAAGGCCGCCGCTATC
NONE
OsAffx.24606.1.S1_at--1074--8191Chr01:16170358..16170382 (25 bp)
GGAAGGCCGCCGCTATCGTTGCCAC
LOC_Os01g28280
OsAffx.24606.1.S1_at--940--9191Chr01:16170339..16170363 (25 bp)
TGCCACCTTCTGGAAGTGAAGACTC
LOC_Os01g28280
OsAffx.24606.1.S1_at--255--1411Chr01:16170057..16170344 (25 bp)
AGACTCGAGCAGAAGTGCGGCACTC
LOC_Os01g28280
OsAffx.24606.1.S1_at--18--1471Chr01:16170047..16170068 (22 bp)
AGAAGTGCGGCACTCGCCACCGTGC
LOC_Os01g28280
Target Sequence 
CAGGCTGCCGTTGGCGCTCGACGTGGCGGGCGGCGGAGGCGTAGGCATGTTTGTTGCTTCCTGTGCTGCCGCCACGGGCG
CCGCGTTGTCGGCGACCGGGCACATTCTTGCATGCTTGCTCCTCGCCGGAGAGAGCAGAAGGGACAGCTCGGCCAGGGGA
GGCTTGTGGAAGGCCGCCGCTATCGTTGCCACCTTCTGGAAGTGAAGACTCGAGCAGAAGTGCGGCACTCGCCACCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis