Browse Element(s) Details


OsAffx.23428.1.S1_at

Description gb:NM_193908.1
DB_XREF= gi:34914899
GEN=B1096D03.13
TID=OsAffx.23428.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.13 (B1096D03.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g282901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28260OsAffx.21121.1.S1_x_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28260OsAffx.21121.2.S1_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28280OsAffx.24606.1.S1_at11/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_x_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28290OsAffx.23428.1.S1_at1/111+16173091..16174560hypothetical protein
LOC_Os01g28300Os.25470.1.S1_at9/111+16180024..16181414F-box domain containing protein, expressed
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28320OsAffx.642.2.A1_at11/111+16190012..16190696hypothetical protein
LOC_Os01g28330Os.45173.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28330Os.38764.1.S1_x_at1/111+16193735..16199832retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23428.1.S1_at--1100--2432Chr10:1837801..1837822 (22 bp)
CTTGACAAAGGTGCCGATTTTTGGT
NONE
OsAffx.23428.1.S1_at--62--6511Chr01:16175183..16175207 (25 bp)
GATTTTTGGTGTAGAACCGGCACTT
NONE
OsAffx.23428.1.S1_at--394--1671Chr01:16175130..16175154 (25 bp)
AGCCGCTGGACAATGCCACGTTGGA
NONE
OsAffx.23428.1.S1_at--594--2531Chr01:16173661..16173685 (25 bp)
AACTCGGTACTGATCTTACAGTTGT
LOC_Os01g28290
OsAffx.23428.1.S1_at--793--102510Chr06:15899214..15899474 (25 bp)
TTTGAGGTCAAAACCGGCACCTATT
NONE
OsAffx.23428.1.S1_at--196--5092Chr02:21774190..21774297 (24 bp)
GCACCTATTTGACAACCACGTGGCA
NONE
OsAffx.23428.1.S1_at--139--8971Chr01:16171304..16171328 (25 bp)
TGACAACCACGTGGCAATTTGGCTT
NONE
OsAffx.23428.1.S1_at--666--82110Chr10:4205730..4205832 (25 bp)
GGCAATTTGGCTTAGAACCGGCACC
NONE
OsAffx.23428.1.S1_at--56--4332Chr10:1850609..1850677 (24 bp)
GAACCGGCACCTATTAAGACCATAA
NONE
OsAffx.23428.1.S1_at--792--7891Chr01:16171246..16171270 (25 bp)
GGTTCTAGAACCAGCACTGATGACA
NONE
OsAffx.23428.1.S1_at--246--8977Chr12:16123071..16123095 (25 bp)
TGACAAGTATCATCAGTGCCGCCTC
NONE
Target Sequence 
CTTGACAAAGGTGCCGATTTTTGGTGTAGAACCGGCACTTTTGTTCCAGTAAAAGGGGCGCACTCTGCAGCCGCTGGACA
ATGCCACGTTGGAGTGAAGTGGATCGATGGANNGNNNTCCNTGNNNNNNNNCTNGNNNNNNCNNTCNNTNTNNCTNTNTN
NNNNNCGGAGGCCATCCTACTCGGATTCCAGCGCGCTCGTCCCCCAGATGGGCGGTGGGAATGAAAGCTTCGGAGTAGTG
TTACTCGAGATGTTAACCGGTAGACGATCAATGGACAAGAAGCGGCCTGCTGGGTTTGGGTATGTATTCAAAGGATGGAT
TGATCCAAACATCACATCTCCTGCAAAACTCGGTACTGATCTTACAGTTGTTGTCAGAAGTTTGGAGCAGGATGCACTTC
AAGGTCACAGAGAATGGGTGGANNATNNNNNTNNNNNNTTTGAGGTCAAAACCGGCACCTATTTGACAACCACGTGGCAA
TTTGGCTTAGAACCGGCACCTATTAAGACCATAAAGGTGCCGGTTCTAGAACCAGCACTGATGACAAGTATCATCAGTGC
CGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis