Browse Element(s) Details


OsAffx.21121.1.S1_x_at

Description gb:NM_193905.1
DB_XREF= gi:34914893
GEN=B1096D03.10
TID=OsAffx.21121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.10 (B1096D03.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2826011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28230OsAffx.11240.1.S1_at11/111+16141223..16142017hypothetical protein
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28260OsAffx.21121.1.S1_x_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28260OsAffx.21121.2.S1_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28280OsAffx.24606.1.S1_at11/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_x_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28280OsAffx.24606.2.S1_at2/111+16169828..16170645hypothetical protein
LOC_Os01g28290OsAffx.23428.1.S1_at1/111+16173091..16174560hypothetical protein
LOC_Os01g28300Os.25470.1.S1_at9/111+16180024..16181414F-box domain containing protein, expressed
LOC_Os01g28310OsAffx.32083.1.S1_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.1.S1_x_at11/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.3.S1_x_at6/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.4.S1_x_at4/111+16183809..16187186Transposable element protein, putative, Transposase_24
LOC_Os01g28310OsAffx.32083.2.S1_x_at2/111+16183809..16187186Transposable element protein, putative, Transposase_24

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21121.1.S1_x_at--267--6611Chr01:16162719..16162743 (25 bp)
GTTGGCCCTGCTTGATGGCTGTCAA
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--327--871Chr01:16162733..16162757 (25 bp)
ATGGCTGTCAAGTACTCAGCGCCAA
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--304--211Chr01:16162762..16163076 (25 bp)
ATTTGCGCTGAGCTCCTGGACTTAG
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--207--5911Chr01:16163062..16163085 (24 bp)
GAGCTCCTGGACTTAGATGCGCCTT
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--917--1291Chr01:16163075..16163099 (25 bp)
AGATGCGCCTTCTCTGGCATGCCTT
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--95--3151Chr01:16163110..16163132 (23 bp)
AATTCTATACCCTCACACACTGGAC
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--989--7611Chr01:16163314..16163338 (25 bp)
GGGACTCTACAATATCTTTTGGCAT
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--310--5531Chr01:16163399..16163423 (25 bp)
GAAAACTGATGTCTGCTCGATTGCT
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--771--751Chr01:16163407..16163431 (25 bp)
ATGTCTGCTCGATTGCTCTAGATGA
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--147--10471Chr01:16163463..16163487 (25 bp)
TTACTTAATGTGGATCAACTTGGAG
LOC_Os01g28260
OsAffx.21121.1.S1_x_at--782--2511Chr01:16163479..16163503 (25 bp)
AACTTGGAGGGATCGTGACATGTAC
LOC_Os01g28260
Target Sequence 
GTTGGCCCTGCTTGATGGCTGTCAAGTACTCAGCGCCAACCGCATTTGCGCTGAGCTCCTGGACTTAGATGCGCCTTCTC
TGGCATGCCTTTGCCGCCTCCAATTCTATACCCTCACACACTGGACAGGGGACTCTACAATATCTTTTGGCATTGACAAG
AAAAAGAAAGGAAAAAGAAAGAAAACTGATGTCTGCTCGATTGCTCTAGATGAAGATCAAATAAATGTTTATCAATTTGG
AACTTTACTTAATGTGGATCAACTTGGAGGGATCGTGACATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21121.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis