Browse Element(s) Details


Os.48695.1.S1_x_at

Description gb:CR287283
DB_XREF= gi:44673849
DB_XREF=CR287283
CLONE=p545a05p5
TID=Os.48695.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.48695 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T04835 (A.thaliana) T04835 probable serinethreonine-specific protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g353901/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35330Os.26914.1.S1_at11/117+21139268..21142585receptor-like protein kinase homolog RK20-1, putative, expressed
LOC_Os07g35340Os.31858.3.S1_x_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_at11/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.2.S1_x_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340Os.31858.1.S1_at10/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35340OsAffx.5535.1.S1_x_at1/117+21144849..21148033Protein kinase domain containing protein, expressed
LOC_Os07g35350Os.25578.1.S1_at11/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35350Os.57525.1.S1_x_at10/117+21148322..21150633Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35360OsAffx.16565.1.S1_at11/117+21152391..21152960hypothetical protein
LOC_Os07g35370Os.15426.1.S1_at11/117+21153702..21157102Protein kinase domain containing protein, expressed
LOC_Os07g35380Os.31858.2.S1_at1/117+21159451..21162153Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.19584.1.A1_at11/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35390Os.48695.1.S1_x_at1/117+21165567..21168984Protein kinase domain containing protein, expressed
LOC_Os07g35400NANA7+21170504..21170956hypothetical protein
LOC_Os07g35410Os.26816.1.A1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.26816.2.S1_s_at11/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410OsAffx.5535.1.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35410Os.31858.2.S1_x_at1/117+21173358..21176868Protein kinase domain containing protein, expressed
LOC_Os07g35420Os.43567.1.S1_x_at3/117+21180252..21180786transposon protein, putative, unclassified
LOC_Os07g35420Os.38172.1.S1_x_at3/117+21180252..21180786transposon protein, putative, unclassified
LOC_Os07g35430OsAffx.22848.3.S1_x_at3/117+21183325..21186369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35440Os.24831.2.S1_at5/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35440Os.55127.1.S1_at1/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35440Os.53142.1.S1_at1/117+21191497..21196338retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48695.1.S1_x_at--631--7851NONE
GGTAGTCCAGTGTTCGCTTACCAGA
NONE
Os.48695.1.S1_x_at--477--9231NONE
TCCAGTGTTCGCTTACCAGAGCTAA
NONE
Os.48695.1.S1_x_at--122--3671NONE
CTTACCAGAGCTAAGCCTGAGGCCT
NONE
Os.48695.1.S1_x_at--561--3031Chr07:21168777..21168801 (25 bp)
AATCCTACGAGAGAAGATTGTGCTA
LOC_Os07g35390
Os.48695.1.S1_x_at--555--10811NONE
TTGTGCTACAGCGTGCTACCATATT
NONE
Os.48695.1.S1_x_at--746--1631NONE
AGCGTGCTACCATATTCATGTGTCG
NONE
Os.48695.1.S1_x_at--670--3571NONE
CATATTCATGTGTCGTAGCAATTTA
NONE
Os.48695.1.S1_x_at--222--6951NONE
GTAGCAATTTAGAAATGGCCGCCAG
NONE
Os.48695.1.S1_x_at--44--2311NONE
AAATGGCCGCCAGATCTTGATCGGA
NONE
Os.48695.1.S1_x_at--567--8411NONE
GGCCGCCAGATCTTGATCGGAGTGA
NONE
Os.48695.1.S1_x_at--1035--4411NONE
GCCAGATCTTGATCGGAGTGATCAT
NONE
Target Sequence 
GGTAGTCCAGTGTTCGCTTACCAGAGCTAAGCCTGAGGCCTGAAGAGNCCGTGCAGAATCCTACGAGAGAAGATTGTGCT
ACAGCGTGCTACCATATTCATGTGTCGTAGCAATTTAGAAATGGCCGCCAGATCTTGATCGGAGTGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48695.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis