Browse Element(s) Details


Os.49928.1.S1_at

Description gb:AK119381.1
DB_XREF= gi:37989004
TID=Os.49928.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B04, full insert sequence.
FL= gb:AK119381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3550011/11expressed protein
LOC_Os05g299103/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35460NANA7+21203594..21207115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35470OsAffx.16566.1.S1_at11/117+21211957..21212657hypothetical protein
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_s_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520OsAffx.16567.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35520Os.7086.1.S1_at11/117+21243181..21246138Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49928.1.S1_at--381--6412Chr05:17233414..17233438 (25 bp)
GATCTGGAAATGTTGGGCGCCGCCA
LOC_Os05g29910
Os.49928.1.S1_at--807--5171Chr07:21230961..21230985 (25 bp)
GCAAGTTCTTCGCATGGTTGGTTAT
LOC_Os07g35500
Os.49928.1.S1_at--275--5552Chr05:17233515..17233539 (25 bp)
GAAACCAACAGTATTGCCCACTTTG
LOC_Os05g29910
Os.49928.1.S1_at--837--3252Chr05:17233592..17233616 (25 bp)
CAACGCATCTGGCTGGATATCCAAA
LOC_Os05g29910
Os.49928.1.S1_at--981--8111Chr07:21230784..21230808 (25 bp)
GGACTGGTCTTAATCTCAACATTCA
LOC_Os07g35500
Os.49928.1.S1_at--555--2212Chr05:17233644..17234032 (25 bp)
ACAACTGGGACAGATGTGCCTCCGT
NONE
Os.49928.1.S1_at--993--8571Chr07:21230725..21230749 (25 bp)
TGGTATCTACTCATGCACAGTCGGC
LOC_Os07g35500
Os.49928.1.S1_at--242--471Chr07:21230662..21230686 (25 bp)
ATCTCCTGGGAACTATGGTGCACGA
LOC_Os07g35500
Os.49928.1.S1_at--6--452Chr05:17233776..17233800 (25 bp)
ATCTTTTGACACAATGGCAGCCCGC
NONE
Os.49928.1.S1_at--1034--1451Chr07:21230584..21230608 (25 bp)
AGAAGTGGCTACGTGGGTCCTTGCA
LOC_Os07g35500
Os.49928.1.S1_at--434--1132Chr05:17233869..17233893 (25 bp)
AGTGCGTTTACTACTCTGGGAGGAA
NONE
Target Sequence 
GATCTGGAAATGTTGGGCGCCGCCAAAATGCAAGTTCTTCGCATGGTTGGTTATGCAAAACCAGGTGTGGACGGCTGATC
GACTCCAAAAACGAGGCTGGAGAAACCAACAGTATTGCCCACTTTGCCACACTACATTGGAAACGGCAGTCCATCTCCCC
GCTCACTGCAGATTCTCCCAACGCATCTGGCTGGATATCCAAAGATGGACTGGTCTTAATCTCAACATTCACAACTGGGA
CAGATGTGCCTCCGTGGAGGATTGGTGGTATCTACTCATGCACAGTCGGCAAAATCCGACCAAGGCCGTCAAGACCCTAA
TCATCCTCATCTCCTGGGAACTATGGTGCACGAATCTTTTGACACAATGGCAGCCCGCCAACGGCGGTGGTCAACAAAAT
AAAAGGAGAAGTGGCTACGTGGGTCCTTGCAGGGGCATCTAGTCTGAGTGCGTTTACTACTCTGGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis