Browse Element(s) Details


OsAffx.16566.1.S1_at

Description tigr:9635.m03504
TID=OsAffx.16566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3547011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35440Os.24831.2.S1_at5/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35440Os.55127.1.S1_at1/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35440Os.53142.1.S1_at1/117+21191497..21196338retrotransposon protein, putative, unclassified
LOC_Os07g35450Os.53142.1.S1_at1/117+21198852..21199319transposon protein, putative, unclassified
LOC_Os07g35460NANA7+21203594..21207115retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g35470OsAffx.16566.1.S1_at11/117+21211957..21212657hypothetical protein
LOC_Os07g35480Os.6776.1.S1_at11/117+21221578..21224176Glycosyl hydrolases family 17 protein, expressed
LOC_Os07g35490OsAffx.5534.1.S1_at11/117+21228223..21228678hypothetical protein
LOC_Os07g35500Os.49928.1.S1_at11/117+21230447..21234094expressed protein
LOC_Os07g35510Os.14978.1.S1_a_at11/117+21236583..21239569Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16566.1.S1_at--939--9951Chr07:21212584..21212608 (25 bp)
TACCCAACAATGATCTGGCTTCTGT
LOC_Os07g35470
OsAffx.16566.1.S1_at--428--4911Chr07:21212567..21212591 (25 bp)
GCTTCTGTTGGCCAAGATCTGGGTA
LOC_Os07g35470
OsAffx.16566.1.S1_at--961--471Chr07:21212551..21212575 (25 bp)
ATCTGGGTAGCTCGACAAACTTGGT
LOC_Os07g35470
OsAffx.16566.1.S1_at--1119--5031Chr07:21212193..21212217 (25 bp)
GCAGATCCATCTAGCATCTCTATTG
LOC_Os07g35470
OsAffx.16566.1.S1_at--236--8891Chr07:21212170..21212194 (25 bp)
TGAGTACGCGACGTTCCATGACAAT
LOC_Os07g35470
OsAffx.16566.1.S1_at--295--2771Chr07:21212118..21212142 (25 bp)
AAGACGTACTTCAACCTCTTTGACA
LOC_Os07g35470
OsAffx.16566.1.S1_at--43--9371Chr07:21212087..21212111 (25 bp)
TCGACATTGTTTACGCCGCGATAAA
LOC_Os07g35470
OsAffx.16566.1.S1_at--305--3291Chr07:21212062..21212086 (25 bp)
CAAAGTTTCTGGTGTGTCTGTCCTC
LOC_Os07g35470
OsAffx.16566.1.S1_at--528--7451Chr07:21212049..21212073 (25 bp)
GTGTCTGTCCTCGATGTGAAAGCTA
LOC_Os07g35470
OsAffx.16566.1.S1_at--1066--2671Chr07:21212030..21212054 (25 bp)
AAGCTACGGAATCGAGGTACCCCTG
LOC_Os07g35470
OsAffx.16566.1.S1_at--969--6771Chr07:21211987..21212011 (25 bp)
GTTAGCCGATGCAAACGTTGACTCA
LOC_Os07g35470
Target Sequence 
TACCCAACAATGATCTGGCTTCTGTTGGCCAAGATCTGGGTAGCTCGACAAACTTGGTAAAGAACAATGTGGTGCTGTAC
CTCAACCAGGGCACACTGATCAATGCAGATCCATCTAGCATCTCTATTGAGTACGCGACGTTCCATGACAATGGTGGTGT
GCTTGACAAAAATACCTACAAGACGTACTTCAACCTCTTTGACACCGACCTCGACATTGTTTACGCCGCGATAAACAAAG
TTTCTGGTGTGTCTGTCCTCGATGTGAAAGCTACGGAATCGAGGTACCCCTGGGGTATGAAGATACCCCCGTTAGCCGAT
GCAAACGTTGACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis