Browse Element(s) Details


Os.53445.1.S1_at

Description gb:AK103017.1
DB_XREF= gi:32988226
TID=Os.53445.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116N08, full insert sequence.
FL= gb:AK103017.1 gb:AK072666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1466011/11SET domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein
LOC_Os08g14630NANA8+8794611..8795461hypothetical protein
LOC_Os08g14640Os.22829.1.S1_at11/118+8796477..8800537expressed protein
LOC_Os08g14650OsAffx.29199.1.S1_at10/118+8802883..8804027hypothetical protein
LOC_Os08g14650OsAffx.24469.1.S1_x_at1/118+8802883..8804027hypothetical protein
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed
LOC_Os08g14670NANA8+8816273..8824399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14679NANA8+8826417..8826784NA
LOC_Os08g14690Os.47463.1.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.14491.2.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690OsAffx.18435.1.S1_x_at3/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_x_at2/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_at1/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14700Os.14978.1.S1_a_at4/118+8830912..8833011Glycosyl hydrolases family 17 protein
LOC_Os08g14710OsAffx.16999.1.S1_at11/118+8834625..8837728hypothetical protein
LOC_Os08g14710Os.55288.1.S1_at1/118+8834625..8837728hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030785molecular_function[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53445.1.S1_at--926--10091Chr08:8807425..8807445 (21 bp)
TAGGCAGCATTTGCGCCAGCAGTAT
LOC_Os08g14660
Os.53445.1.S1_at--253--6311Chr08:8807400..8807424 (25 bp)
GATGAGTTATTTCCAATGCTGTGCA
LOC_Os08g14660
Os.53445.1.S1_at--776--611Chr08:8807385..8807409 (25 bp)
ATGCTGTGCATAAAGTTTCCTGATA
LOC_Os08g14660
Os.53445.1.S1_at--865--7431Chr08:8807346..8807370 (25 bp)
GTGTATACCTGGGACAATTTTCTAT
LOC_Os08g14660
Os.53445.1.S1_at--723--2251Chr08:8807077..8807101 (25 bp)
AAATTTCCTCTGTCTAGACCATGCA
LOC_Os08g14660
Os.53445.1.S1_at--575--2711Chr08:8807020..8807044 (25 bp)
AAGCATCCAGGATCTCATCTTATCA
LOC_Os08g14660
Os.53445.1.S1_at--459--10411Chr08:8807001..8807025 (25 bp)
TTATCACTTTCTATGGTTTTCTACC
LOC_Os08g14660
Os.53445.1.S1_at--797--5551Chr08:8806972..8806996 (25 bp)
GACAACCCTTATGATGTTATACCTT
LOC_Os08g14660
Os.53445.1.S1_at--181--2751Chr08:8806667..8806691 (25 bp)
AAGAAGACAGTTCATCTCCGTCCGT
LOC_Os08g14660
Os.53445.1.S1_at--513--2791Chr08:8806591..8806615 (25 bp)
AAGAGGACCTCCGACGTATGGGCTG
LOC_Os08g14660
Os.53445.1.S1_at--610--4331Chr08:8806549..8806573 (25 bp)
CCATCTCCATGCCATTCTAGGTTGT
LOC_Os08g14660
Target Sequence 
TAGGCAGCATTTGCGCCAGCAGTATGATGAGTTATTTCCAATGCTGTGCATAAAGTTTCCTGATATATTCAAACAAGACG
TGTATACCTGGGACAATTTTCTATGGGCATGTGAATTATGGTATTCTAACAGTATGATGGTTGTATTAAGTAGTGGGAAA
TTAACAACTTGCTTGATTCNNNNTGCCNNACTTNTNNNNCNNTNGGTTTCTCCTCACATTCTTAACTATGGTCGGGTAGA
TAAAGTTACGAAATCTTTGAAATTTCCTCTGTCTAGACCATGCAAAGCAGGGGAGCAATGTTTTCTCAGTTATGGGAAGC
ATCCAGGATCTCATCTTATCACTTTCTATGGTTTTCTACCAAGAGACAACCCTTATGATGTTATACCTTTAGATCTTGAT
ACATCTGTGGATGAAGAAGACAGTTCATCTCCGTCCGTAACTACAAGCCAAACCAGTCATATGGTACGTGGGACATGGCT
GTCCAGATTAAGAGGACCTCCGACGTATGGGCTGCCTCATCGCTTGGTATCCCATCTCCATGCCATTCTAGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis