Browse Element(s) Details


OsAffx.16999.1.S1_at

Description tigr:9636.m01472
TID=OsAffx.16999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1471011/11hypothetical protein
LOC_Os06g121402/11hypothetical protein
LOC_Os01g684701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed
LOC_Os08g14670NANA8+8816273..8824399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14679NANA8+8826417..8826784NA
LOC_Os08g14690Os.47463.1.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.14491.2.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690OsAffx.18435.1.S1_x_at3/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_x_at2/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_at1/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14700Os.14978.1.S1_a_at4/118+8830912..8833011Glycosyl hydrolases family 17 protein
LOC_Os08g14710OsAffx.16999.1.S1_at11/118+8834625..8837728hypothetical protein
LOC_Os08g14710Os.55288.1.S1_at1/118+8834625..8837728hypothetical protein
LOC_Os08g14720OsAffx.29200.1.S1_at11/118+8839134..8839718hypothetical protein
LOC_Os08g14730OsAffx.8647.1.S1_at5/118+8856146..8861298hypothetical protein
LOC_Os08g14744OsAffx.8647.1.S1_at3/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14744OsAffx.15648.1.S1_at1/118+8862275..8866876retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16999.1.S1_at--98--5791Chr08:8837140..8837164 (25 bp)
GACGACGACAACACGGGAGGACTGC
LOC_Os08g14710
OsAffx.16999.1.S1_at--350--1031Chr08:8837261..8837285 (25 bp)
AGGTCAGTGCTCCAGTGTCACAGCC
LOC_Os08g14710
OsAffx.16999.1.S1_at--1142--10632Chr08:8837396..8837420 (25 bp)
TTCGCCGACACGGTGAGTGCGTGGT
LOC_Os08g14710
OsAffx.16999.1.S1_at--390--4491Chr08:8837422..8837446 (25 bp)
GCCGGAGACGCCTAGGAACGCGACG
LOC_Os08g14710
OsAffx.16999.1.S1_at--1055--4692Chr08:8837465..8837489 (25 bp)
GCGGCGACCGGGAAAGCGTTGCTGT
LOC_Os08g14710
OsAffx.16999.1.S1_at--893--2351Chr08:8837477..8837501 (25 bp)
AAAGCGTTGCTGTCGTTGGGCGGCA
LOC_Os08g14710
OsAffx.16999.1.S1_at--999--9371Chr08:8837489..8837513 (25 bp)
TCGTTGGGCGGCACTAGAGGAGCTC
LOC_Os08g14710
OsAffx.16999.1.S1_at--25--8731Chr08:8837526..8837550 (25 bp)
TGTCGGTCTCGCCAGTTGTCGCGTC
LOC_Os08g14710
OsAffx.16999.1.S1_at--809--4851Chr08:8837573..8837597 (25 bp)
GCTAGCCTCGTGTGGCTCTTCCTTA
LOC_Os08g14710
OsAffx.16999.1.S1_at--1010--8271Chr08:8837586..8837610 (25 bp)
GGCTCTTCCTTATCCACTTCGGGAA
LOC_Os08g14710
OsAffx.16999.1.S1_at--38--1992Chr08:8837600..8837624 (25 bp)
CACTTCGGGAAGCAAACCGTCGGAG
LOC_Os08g14710
Target Sequence 
GACGACGACAACACGGGAGGACTGCTCCTCCGCCGCGGCCCGGTCGCCCCACAGCCTCCTCAGCACAGTCTGCCACGGCA
TCGGCCTCGTCGGAGGCGAGCGAGGCACGCGCATCCCACCCAGGTCAGTGCTCCAGTGTCACAGCCTCTCCTCCGCCTGG
GCCGCCGCGCTCTCCTTCGACACCTTCATCGACCACCACCTCCGTCTCGCCAACCGCCGATGGGGTCCCAAGCTTTGCAT
CCCGCCGGAATCGGCGTTCGCCGACACGGTGAGTGCGTGGTCGCCGGAGACGCCTAGGAACGCGACGGCGGCGGCGTCTG
GGAAGGCGGCGACCGGGAAAGCGTTGCTGTCGTTGGGCGGCACTAGAGGAGCTCGGGCGGCGCCAGTGTCGGTCTCGCCA
GTTGTCGCGTCGTCTCCTCTCCCGCCTTGCGCCGCTAGCCTCGTGTGGCTCTTCCTTATCCACTTCGGGAAGCAAACCGT
CGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis