Browse Element(s) Details


OsAffx.8647.1.S1_at

Description gb:XM_354369.1
DB_XREF= gi:35190791
GEN=OJ1793_E11.15
TID=OsAffx.8647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g147305/11hypothetical protein
LOC_Os08g147443/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14700Os.14978.1.S1_a_at4/118+8830912..8833011Glycosyl hydrolases family 17 protein
LOC_Os08g14710OsAffx.16999.1.S1_at11/118+8834625..8837728hypothetical protein
LOC_Os08g14710Os.55288.1.S1_at1/118+8834625..8837728hypothetical protein
LOC_Os08g14720OsAffx.29200.1.S1_at11/118+8839134..8839718hypothetical protein
LOC_Os08g14730OsAffx.8647.1.S1_at5/118+8856146..8861298hypothetical protein
LOC_Os08g14744OsAffx.8647.1.S1_at3/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14744OsAffx.15648.1.S1_at1/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14760Os.52921.1.S1_at11/118+8867836..88725064-coumarate-CoA ligase 1, putative, expressed
LOC_Os08g14770Os.9720.1.S1_at11/118+8873567..8881798aminotransferase class III family protein, putative, expressed
LOC_Os08g14780OsAffx.29202.1.S1_at11/118+8882972..8884610hypothetical protein
LOC_Os08g14780Os.50047.1.S1_at1/118+8882972..8884610hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8647.1.S1_at--677--4052Chr07:20071910..20071934 (25 bp)
CGAGGCAGCAGAGCCACCCCCGCCG
NONE
OsAffx.8647.1.S1_at--534--819Chr07:20071954..20071978 (25 bp)
ATGGTGGTATGGCTTTAGTAGCTTT
NONE
OsAffx.8647.1.S1_at--391--8616Chr07:20071955..20071979 (25 bp)
TGGTGGTATGGCTTTAGTAGCTTTT
NONE
OsAffx.8647.1.S1_at--620--7734Chr07:20071956..20071980 (25 bp)
GGTGGTATGGCTTTAGTAGCTTTTC
NONE
OsAffx.8647.1.S1_at--330--7516Chr07:20071957..20071981 (25 bp)
GTGGTATGGCTTTAGTAGCTTTTCC
NONE
OsAffx.8647.1.S1_at--106--8576Chr07:20071958..20071982 (25 bp)
TGGTATGGCTTTAGTAGCTTTTCCT
NONE
OsAffx.8647.1.S1_at--950--7856Chr07:20071959..20071983 (25 bp)
GGTATGGCTTTAGTAGCTTTTCCTT
NONE
OsAffx.8647.1.S1_at--183--6933Chr07:20071960..20071984 (25 bp)
GTATGGCTTTAGTAGCTTTTCCTTC
NONE
OsAffx.8647.1.S1_at--130--10112Chr07:20071961..20071985 (25 bp)
TATGGCTTTAGTAGCTTTTCCTTCT
NONE
OsAffx.8647.1.S1_at--101--813Chr07:20071962..20071986 (25 bp)
ATGGCTTTAGTAGCTTTTCCTTCTT
NONE
OsAffx.8647.1.S1_at--619--8313Chr07:20071963..20071987 (25 bp)
TGGCTTTAGTAGCTTTTCCTTCTTT
NONE
Target Sequence 
CGAGGCAGCAGAGCCACCCCCGCCGCCGCGGCGGTGAGGAGGGGATGGTGGTATGGCTTTAGTAGCTTTTCCTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis