Browse Element(s) Details


Os.9720.1.S1_at

Description gb:AK100945.1
DB_XREF= gi:32986154
TID=Os.9720.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138G14, full insert sequence.
FL= gb:AK100945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1477011/11aminotransferase class III family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14730OsAffx.8647.1.S1_at5/118+8856146..8861298hypothetical protein
LOC_Os08g14744OsAffx.8647.1.S1_at3/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14744OsAffx.15648.1.S1_at1/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14760Os.52921.1.S1_at11/118+8867836..88725064-coumarate-CoA ligase 1, putative, expressed
LOC_Os08g14770Os.9720.1.S1_at11/118+8873567..8881798aminotransferase class III family protein, putative, expressed
LOC_Os08g14780OsAffx.29202.1.S1_at11/118+8882972..8884610hypothetical protein
LOC_Os08g14780Os.50047.1.S1_at1/118+8882972..8884610hypothetical protein
LOC_Os08g14790OsAffx.17001.1.S1_at11/118+8889031..8889450hypothetical protein
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein
LOC_Os08g14810Os.27450.1.S1_at10/118+8897977..8902457NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9720.1.S1_at--1098--10331Chr08:8874736..8874760 (25 bp)
TTTATCGTCCCTGCCAAATGTGAAA
LOC_Os08g14770
Os.9720.1.S1_at--843--8171Chr08:8874696..8874720 (25 bp)
GGAACTCTGTGTGCAATCGAGCTAA
LOC_Os08g14770
Os.9720.1.S1_at--853--10411Chr08:8874040..8874064 (25 bp)
TTATGCGAGTTCCTTAATCCGACAA
LOC_Os08g14770
Os.9720.1.S1_at--745--8011Chr08:8874007..8874031 (25 bp)
GGAGGATAACATCTACGCTCGGCCC
LOC_Os08g14770
Os.9720.1.S1_at--486--9451Chr08:8873989..8874013 (25 bp)
TCGGCCCCTGGGTAATGTGATATAC
LOC_Os08g14770
Os.9720.1.S1_at--809--771Chr08:8873961..8873985 (25 bp)
ATGTGTGGTCCATGCACAACTCAAG
LOC_Os08g14770
Os.9720.1.S1_at--706--2531Chr08:8873944..8873968 (25 bp)
AACTCAAGATAGCTGCACTCGCCAG
LOC_Os08g14770
Os.9720.1.S1_at--253--1591Chr08:8873921..8873945 (25 bp)
AGCTCGCCAAAGTGCATCGTAGACT
LOC_Os08g14770
Os.9720.1.S1_at--507--2891Chr08:8873822..8873846 (25 bp)
AAGGGTTTGTGTCCATGCCATTATA
LOC_Os08g14770
Os.9720.1.S1_at--783--631Chr08:8873620..8873644 (25 bp)
ATGCTATCTGGTTATGTTCACACGA
LOC_Os08g14770
Os.9720.1.S1_at--794--6751Chr08:8873605..8873629 (25 bp)
GTTCACACGAGTTTGTGGCCATCTG
LOC_Os08g14770
Target Sequence 
TTTATCGTCCCTGCCAAATGTGAAAAGAGTGGTGTCCTTAGGAACTCTGTGTGCAATCGAGCTAAAGGCTGAGGGATCAG
ATGCTGGGTACGCATCACTTTATGCGAGTTCCTTAATCCGACAACTTCGTGAGGAGGATAACATCTACGCTCGGCCCCTG
GGTAATGTGATATACCTTATGTGTGGTCCATGCACAACTCAAGATAGCTGCACTCGCCAGCTCGCCAAAGTGCATCGTAG
ACTTCAAAAGTTGAATTGAGTTCGCCACTAACAATAGTGAGCAGAATAATGAGGTATCAGACAGTCCCATAAAATAAAAG
GGTTTGTGTCCATGCCATTATAATTTTCGCGTTGAATTGAGTTTGCCAATAATATTTAATGAGCAGAATAATGAGGTGTC
AGACAGTACCCGTAAAATAAAAGGGTTAATTGTATCCATGATATTATAACTTTCACGGTTTTGAAATATGTCATTACTAT
TGACATAATTGGAACCATANAAAAGGTGGGGTGTGAGACATGCTATCTGGTTATGTTCACACGAGTTTGTGGCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis