Browse Element(s) Details


Os.52921.1.S1_at

Description gb:AK069932.1
DB_XREF= gi:32979956
TID=Os.52921.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036P12, full insert sequence.
FL= gb:AK069932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1476011/114-coumarate-CoA ligase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14730OsAffx.8647.1.S1_at5/118+8856146..8861298hypothetical protein
LOC_Os08g14744OsAffx.8647.1.S1_at3/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14744OsAffx.15648.1.S1_at1/118+8862275..8866876retrotransposon protein, putative, unclassified
LOC_Os08g14760Os.52921.1.S1_at11/118+8867836..88725064-coumarate-CoA ligase 1, putative, expressed
LOC_Os08g14770Os.9720.1.S1_at11/118+8873567..8881798aminotransferase class III family protein, putative, expressed
LOC_Os08g14780OsAffx.29202.1.S1_at11/118+8882972..8884610hypothetical protein
LOC_Os08g14780Os.50047.1.S1_at1/118+8882972..8884610hypothetical protein
LOC_Os08g14790OsAffx.17001.1.S1_at11/118+8889031..8889450hypothetical protein
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009698biological_processphenylpropanoid metabolism
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52921.1.S1_at--394--391Chr08:8871676..8871700 (25 bp)
ATCACCCATCCAAGCATTGCTGATG
LOC_Os08g14760
Os.52921.1.S1_at--195--491Chr08:8871873..8871897 (25 bp)
ATCGGAGAAATACCAGTCGCCTTCG
LOC_Os08g14760
Os.52921.1.S1_at--649--1291Chr08:8872093..8872117 (25 bp)
AGATCCGGGAGGTCTTCTTCGTTGA
LOC_Os08g14760
Os.52921.1.S1_at--1066--10231Chr08:8872110..8872134 (25 bp)
TTCGTTGACAAAATCCCCAAGGCGC
LOC_Os08g14760
Os.52921.1.S1_at--297--11Chr08:8872192..8872216 (25 bp)
AAGCTTAATTTACAACCGGCCTCAG
LOC_Os08g14760
Os.52921.1.S1_at--1125--10311Chr08:8872200..8872224 (25 bp)
TTTACAACCGGCCTCAGACATGAAA
LOC_Os08g14760
Os.52921.1.S1_at--372--6672Chr08:8872263..8872287 (25 bp)
GTTGCAAATTACACATTCTGTTCTG
LOC_Os08g14760
Os.52921.1.S1_at--545--5231Chr08:8872287..8872311 (25 bp)
GAATAGTTTGTGTCTTCCATTTATA
LOC_Os08g14760
Os.52921.1.S1_at--235--10451Chr08:8872378..8872402 (25 bp)
TTAGGTCGGCTAGGTTTGCTCATTT
LOC_Os08g14760
Os.52921.1.S1_at--496--9651Chr08:8872444..8872468 (25 bp)
TCAGACCTGTTTATTGTTCTTGCTG
LOC_Os08g14760
Os.52921.1.S1_at--814--6731Chr08:8872459..8872483 (25 bp)
GTTCTTGCTGGTGTCTTTGTAATAT
LOC_Os08g14760
Target Sequence 
ATCACCCATCCAAGCATTGCTGATGCTGCTGTTGTTGGGAAACAAATTGAGCCTGAAATCGGAGAAATACCAGTCGCCTT
CGTGGCGAAAACCGAAGGGAGTGAGCTGAGTGAAGATGATGTCAAACAATTCGTAGCAAAGGAGGTGATCTACTACAAGA
AGATCCGGGAGGTCTTCTTCGTTGACAAAATCCCCAAGGCGCCGTCAGGGAAGATCCTGAGAAAGGAACTGAGGAAGCAG
CTGCAACATCTTCAACAAGAAGCTTAATTTACAACCGGCCTCAGACATGAAAAGAATTTAGCATGAACAAGCAAGTTCCA
TGATTCTAATGTTGCAAATTACACATTCTGTTCTGAATAGTTTGTGTCTTCCATTTATATGTGATGGGGGAAAAAAACCC
AGGTACAAATGGATTCTGTGCAATACAAAGGGTGGTGTTACCGTGTTAGGTCGGCTAGGTTTGCTCATTTGCAGAGAGAC
AGGACACTGGGGAAGCCATGTACAAAAATGTTCAGACCTGTTTATTGTTCTTGCTGGTGTCTTTGTAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis