Browse Element(s) Details


Os.50047.1.S1_at

Description gb:AK119766.1
DB_XREF= gi:37989389
TID=Os.50047.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D06, full insert sequence.
FL= gb:AK119766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g525801/11retrotransposon protein, putative, unclassified
LOC_Os08g147801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52540NANA2+32144206..32144508EF hand family protein
LOC_Os02g52550Os.47727.1.S1_s_at11/112+32149366..32150504expressed protein
LOC_Os02g52560Os.20701.1.S1_at11/112+32158655..32161949Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52570Os.43567.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52570Os.38172.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52580Os.50047.1.S1_at1/112+32166812..32170278retrotransposon protein, putative, unclassified
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50047.1.S1_at--127--7591Chr02:6009052..6009076 (25 bp)
GGGCTCACGCAGCTATAGTTCTTCA
NONE
Os.50047.1.S1_at--243--5071Chr02:6009060..6009084 (25 bp)
GCAGCTATAGTTCTTCACGTCGTCG
NONE
Os.50047.1.S1_at--929--7331Chr02:6009135..6009159 (25 bp)
GTGCACGCTGCCGTGTCCGTGAAGC
NONE
Os.50047.1.S1_at--251--5411Chr02:6009155..6009179 (25 bp)
GAAGCTCCACGTCATCGAGGTACTC
NONE
Os.50047.1.S1_at--979--1911Chr02:6009181..6009205 (25 bp)
ACGGGCACGGCGCTACCAGTACCAG
NONE
Os.50047.1.S1_at--240--4852Chr02:6009192..6009216 (25 bp)
GCTACCAGTACCAGCTCGTTGGCGC
NONE
Os.50047.1.S1_at--186--4371Chr02:6009364..6009388 (25 bp)
CCACGCGTGTGCCACGTTGGATAAA
NONE
Os.50047.1.S1_at--1157--2355Chr08:8884074..8884093 (20 bp)
AAACCGCTCTGGATTAGGTCGAGGT
LOC_Os08g14780
Os.50047.1.S1_at--808--9711Chr02:6009437..6009461 (25 bp)
TCAAGGTGGACGATGACAGGTTTTC
NONE
Os.50047.1.S1_at--374--5771Chr02:6009445..6009469 (25 bp)
GACGATGACAGGTTTTCGGGTTTAT
NONE
Os.50047.1.S1_at--842--9732Chr02:6009505..6009529 (25 bp)
TAATTCGCACTTTTTCCTTACATAA
NONE
Target Sequence 
GGGCTCACGCAGCTATAGTTCTTCACGTCGTCGAGGTACTCCACGGGCACGGGGCAGGAGTACATGGGCATCATGATCAT
GGCGTGCACGCTGCCGTGTCCGTGAAGCTCCACGTCATCGAGGTACTCCACGGGCACGGCGCTACCAGTACCAGCTCGTT
GGCGCCGGCGAGCGCCGCCGACAGCCCACGCCCACCGCCCGTCCTCGCCGTGCGCACTGCGCGAGAGAGAGAAGACAGAG
AAGGAAGAGCGGAAGAAGAGCATGACAGGTGGGTCCCACCCTTTTTTATTAAATAAAATGCTGACTAGATTGCCACGCGT
GTGCCACGTTGGATAAAACCGCTCTGGATTAGGTCGAGGTGGGTAATTTGTCCGGTATTGAAAGTTCAAGGTGGACGATG
ACAGGTTTTCGGGTTTATGGGGTAATTTGGAGGACCGCGATAGTTCGAGGGGGTAATTCGCACTTTTTCCTTACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis