Browse Element(s) Details


Os.27299.1.A1_at

Description gb:AK065008.1
DB_XREF= gi:32975026
TID=Os.27299.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.27299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA binding protein RAV2 (P0480E02.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001E21, full insert sequence.
FL= gb:AK065008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0480011/11B3 DNA binding domain containing protein, expressed
LOC_Os04g466101/11PAP_fibrillin family protein, expressed
LOC_Os02g526201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04770NANA1+2178148..2179056retrotransposon protein, putative, unclassified
LOC_Os01g04780NANA1+2179567..2188744retrotransposon protein, putative, unclassified
LOC_Os01g04790NANA1+2192777..2195587hypothetical protein
LOC_Os01g04800Os.27299.1.A1_at11/111+2199080..2200626B3 DNA binding domain containing protein, expressed
LOC_Os01g04814Os.7385.2.S1_a_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04814OsAffx.23116.2.S1_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04830OsAffx.22787.1.S1_at11/111+2221485..2221862hypothetical protein
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27299.1.A1_at--121--7611Chr01:2200226..2200250 (25 bp)
GGGCAAGAGGTCTTCCTACTGAAGA
LOC_Os01g04800
Os.27299.1.A1_at--550--5192Chr02:32184094..32184118 (25 bp)
GCAATGCGTGGTTCATCAGCGTACT
LOC_Os02g52620
Os.27299.1.A1_at--81--4311Chr01:2200282..2200306 (25 bp)
CCTAGGTGCCCTGCTGTTATAGCAT
LOC_Os01g04800
Os.27299.1.A1_at--695--9691Chr01:2200328..2200352 (25 bp)
TCAAATCAAATCTTCTTCTCTTCCA
LOC_Os01g04800
Os.27299.1.A1_at--372--9231Chr01:2200349..2200373 (25 bp)
TCCATCTTTTTTGTTGTTCATCGTC
LOC_Os01g04800
Os.27299.1.A1_at--257--6752Chr01:2200364..2200388 (25 bp)
GTTCATCGTCTGTTGTTTCATCTTC
LOC_Os01g04800
Os.27299.1.A1_at--749--6831Chr01:2200378..2200402 (25 bp)
GTTTCATCTTCGATTTAGAGCTGTT
LOC_Os01g04800
Os.27299.1.A1_at--819--10031Chr01:2200393..2200417 (25 bp)
TAGAGCTGTTCTATCTTCGACTTTC
LOC_Os01g04800
Os.27299.1.A1_at--7--5351Chr01:2200448..2200472 (25 bp)
GAAGTTTGTCAGGTCAGAGATTGCA
LOC_Os01g04800
Os.27299.1.A1_at--800--6451Chr01:2200480..2200504 (25 bp)
GATCAAGATCGAGCTGTATATGTAC
LOC_Os01g04800
Os.27299.1.A1_at--195--8771Chr01:2200494..2200518 (25 bp)
TGTATATGTACAGCCTTATTAGGAA
LOC_Os01g04800
Target Sequence 
GGGCAAGAGGTCTTCCTACTGAAGAGGCAATGCGTGGTTCATCAGCGTACTCCTGCCCTAGGTGCCCTGCTGTTATAGCA
TCAAATCAAATTCATATATAGATCAAATCAAATCTTCTTCTCTTCCATCTTTTTTGTTGTTCATCGTCTGTTGTTTCATC
TTCGATTTAGAGCTGTTCTATCTTCGACTTTCTTTTTTTGTTTTTTGTCTTTATTTTGCATAGAAGTTTGTCAGGTCAGA
GATTGCAAATGATCGATCAAGATCGAGCTGTATATGTACAGCCTTATTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27299.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis