Browse Element(s) Details


Os.7385.2.S1_a_at

Description gb:AK062139.1
DB_XREF= gi:32972157
TID=Os.7385.2
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) AAA-ATPase-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F12, full insert sequence.
FL= gb:AK062139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0481411/11Vacuolar protein sorting-associated protein VPS4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04780NANA1+2179567..2188744retrotransposon protein, putative, unclassified
LOC_Os01g04790NANA1+2192777..2195587hypothetical protein
LOC_Os01g04800Os.27299.1.A1_at11/111+2199080..2200626B3 DNA binding domain containing protein, expressed
LOC_Os01g04814Os.7385.2.S1_a_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04814OsAffx.23116.2.S1_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04830OsAffx.22787.1.S1_at11/111+2221485..2221862hypothetical protein
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative
LOC_Os01g04850OsAffx.30457.3.S1_s_at1/111+2230438..2231310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0019538biological_processprotein metabolism
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7385.2.S1_a_at--1000--771Chr01:2213057..2213081 (25 bp)
ATGTGTTATTTGAACCTGTCCGCAA
LOC_Os01g04814
Os.7385.2.S1_a_at--305--4431Chr01:2213022..2213046 (25 bp)
GCCATGTTCTTCTTTAAGGCTGATG
LOC_Os01g04814
Os.7385.2.S1_a_at--287--791Chr01:2212992..2213016 (25 bp)
ATGTGGATGCCTTGTGGACCAAAGC
LOC_Os01g04814
Os.7385.2.S1_a_at--49--8091Chr01:2212977..2213001 (25 bp)
GGACCAAAGCAATCTGGTGCCGTAC
LOC_Os01g04814
Os.7385.2.S1_a_at--64--7791Chr01:2212962..2212986 (25 bp)
GGTGCCGTACAAACAACCATGCAGG
LOC_Os01g04814
Os.7385.2.S1_a_at--493--971Chr01:2212940..2212964 (25 bp)
AGGAGCTCGCATCCAAGGGCCTTGC
LOC_Os01g04814
Os.7385.2.S1_a_at--122--1271Chr01:2212800..2212824 (25 bp)
AGATTTCGAGAAAGTCCTCGCCAGG
LOC_Os01g04814
Os.7385.2.S1_a_at--474--1071Chr01:2212708..2212732 (25 bp)
AGGGTTGACAAGATTATGCGCACTC
LOC_Os01g04814
Os.7385.2.S1_a_at--868--9151Chr01:2212692..2212716 (25 bp)
TGCGCACTCACTTATGCATAGCTGC
LOC_Os01g04814
Os.7385.2.S1_a_at--930--4951Chr01:2212677..2212701 (25 bp)
GCATAGCTGCTCCACAGAAATGTAT
LOC_Os01g04814
Os.7385.2.S1_a_at--374--10131Chr01:2212648..2212672 (25 bp)
TATGACTTCGATTGTTCTGGTTGGA
LOC_Os01g04814
Target Sequence 
ATGTGTTATTTGAACCTGTCCGCAAAACACAGGATGCCATGTTCTTCTTTAAGGCTGATGGTGATATGTGGATGCCTTGT
GGACCAAAGCAATCTGGTGCCGTACAAACAACCATGCAGGAGCTCGCATCCAAGGGCCTTGCAGCAAAGATCCTTCCACC
ACCAATCTCAAGGACAGATTTCGAGAAAGTCCTCGCCAGGCAGAGACCGACAGTGAGCAAGAAAGACTTGGAGGTGCACG
AAAGGTTTACAAAAGANTTTGGCGAGGAGGGTTGACAAGATTATGCGCACTCACTTATGCATAGCTGCTCCACAGAAATG
TATATTTTATGACTTCGATTGTTCTGGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7385.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis