Browse Element(s) Details


OsAffx.23116.1.S1_at

Description tigr:9629.m00404
TID=OsAffx.23116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MIT domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0484010/11Vacuolar sorting protein 4b, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04800Os.27299.1.A1_at11/111+2199080..2200626B3 DNA binding domain containing protein, expressed
LOC_Os01g04814Os.7385.2.S1_a_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04814OsAffx.23116.2.S1_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04830OsAffx.22787.1.S1_at11/111+2221485..2221862hypothetical protein
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative
LOC_Os01g04850OsAffx.30457.3.S1_s_at1/111+2230438..2231310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0019538biological_processprotein metabolism
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23116.1.S1_at--349--3111Chr01:2224483..2224507 (25 bp)
AATATGCCACATGTTCTGGACCAGG
LOC_Os01g04840
OsAffx.23116.1.S1_at--1069--911Chr01:2224343..2224367 (25 bp)
AGGCTATGCGGCGACGGTTTGACAA
LOC_Os01g04840
OsAffx.23116.1.S1_at--1077--10631Chr01:2224307..2224331 (25 bp)
TTCCCCTACCTGACTTGAAGGCAAG
LOC_Os01g04840
OsAffx.23116.1.S1_at--1005--7611Chr01:2224142..2224166 (25 bp)
GGGACACACCACATAGCTTAACTGA
LOC_Os01g04840
OsAffx.23116.1.S1_at--520--7751Chr01:2224116..2224140 (25 bp)
GGTGATTTTGTGAGCTTGGCCTATC
LOC_Os01g04840
OsAffx.23116.1.S1_at--173--7991Chr01:2223745..2223769 (25 bp)
GGATGCGTTATTTCAACCTGTGAGG
LOC_Os01g04840
OsAffx.23116.1.S1_at--546--1391Chr01:2223688..2223712 (25 bp)
AGACGATGACACGTGGACGCCAAGT
LOC_Os01g04840
OsAffx.23116.1.S1_at--1110--1331Chr01:2223659..2223683 (25 bp)
AGAGTCAGCCTGGTTCCATACAAAC
LOC_Os01g04840
OsAffx.23116.1.S1_at--334--7391NONE
GTGAGGCAGAGACCAACGCTAGACT
NONE
OsAffx.23116.1.S1_at--586--3711Chr01:2222948..2222972 (25 bp)
CTAGACTCTAGCCTTGCCAACAAGA
LOC_Os01g04840
OsAffx.23116.1.S1_at--1079--9811Chr01:2222914..2222938 (25 bp)
TAAAACGGGACAGCGGCATCACCAC
LOC_Os01g04840
Target Sequence 
AATATGCCACATGTTCTGGACCAGGCTATGCGGCGACGGTTTGACAAATGTATCTACATTCCCCTACCTGACTTGAAGGC
AAGGAAAGACACTTTTAAGATCCACATTGGGGACACACCACATAGCTTAACTGAAGGTGATTTTGTGAGCTTGGCCTATC
AAACAGAGGGGTTTTCTGGCTCAGATATTGCTGTTTGTGTGAAGGATGCGTTATTTCAACCTGTGAGGAAAACACAGGAT
GCCAAGTTCTTCATCAAGGCAGACGATGACACGTGGACGCCAAGTGAACAGAGTCAGCCTGGTTCCATACAAACCACCAT
GCAGGAACTCGCATCAAAAGGTTTGGCTGCCAAGATTCTTCTTCCACCAATCTCAAAGATAGATTTCGATGAAGTCCTCG
TGAGGCAGAGACCAACGCTAGACTCTAGCCTTGCCAACAAGACAATCTTGCTAAAACGGGACAGCGGCATCACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis