Browse Element(s) Details


Os.28010.1.S1_at

Description gb:AB082381.1
DB_XREF= gi:30060338
GEN=UV-DDB2
TID=Os.28010.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28010 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) UV-DDB2 mRNA for UV-damaged DNA binding protein 2, complete cds.
PROD=UV-damaged DNA binding protein 2
FL= gb:AB082381.1 gb:AK111907.1 gb:AK112097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0487010/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative
LOC_Os01g04850OsAffx.30457.3.S1_s_at1/111+2230438..2231310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28010.1.S1_at--716--551Chr01:2248233..2248257 (25 bp)
ATCCGCGAGATGATATCCTGGCTTC
LOC_Os01g04870
Os.28010.1.S1_at--639--8191NONE
GGAAGTTCAAGGTCCATTTTCATTT
NONE
Os.28010.1.S1_at--451--211Chr01:2248041..2248065 (25 bp)
ATTTGTATATGGATCAGGCAGCCGG
LOC_Os01g04870
Os.28010.1.S1_at--6--2011Chr01:2247929..2247953 (25 bp)
ACTCGCTTCACTCATACCATAAAGG
LOC_Os01g04870
Os.28010.1.S1_at--543--9831Chr01:2247844..2247868 (25 bp)
TAAACCACTTATTACCAGCTGCTGC
LOC_Os01g04870
Os.28010.1.S1_at--735--4771Chr01:2247827..2247851 (25 bp)
GCTGCTGCAGCATCATTTTTGTACT
LOC_Os01g04870
Os.28010.1.S1_at--896--10391Chr01:2247811..2247835 (25 bp)
TTTTGTACTGTATTGCCTCCTTAGC
LOC_Os01g04870
Os.28010.1.S1_at--259--6871Chr01:2247802..2247826 (25 bp)
GTATTGCCTCCTTAGCTGAAATGCT
LOC_Os01g04870
Os.28010.1.S1_at--200--911Chr01:2247775..2247799 (25 bp)
AGGCTCGTAGTTGTATACTGCAGCA
LOC_Os01g04870
Os.28010.1.S1_at--760--3171Chr01:2247731..2247755 (25 bp)
GAAGTGGTAGTCTCAGTTAGTTTTG
LOC_Os01g04870
Os.28010.1.S1_at--1083--2951Chr01:2247650..2247674 (25 bp)
AATGGCAATATACTGATCCGCTACG
LOC_Os01g04870
Target Sequence 
ATCCGCGAGATGATATCCTGGCTTCAGGAAGTTCAAGGTCCATTTTCATTTGGAAACCAAAGACTGAAAGTGATGCTACT
GAAGAGAGGAACAGAGAGAAGGCAAAGGAATTTGTATATGGATCAGGCAGCCGGAAAAAATCAAATGGCAAGCATGAGAA
TAGCAGTGATGATGACTCAGATGGCAGTTGTGATGGAAAGAAGAAGAAGAAAGCGAAGAAGACTCGCTTCACTCATACCA
TAAAGGGGAAGGGCAAATCCAAGGTTTGATATATATAGTGAAGTTGATGCACCAAACATTTTGACATAAACCACTTATTA
CCAGCTGCTGCAGCATCATTTTTGTACTGTATTGCCTCCTTAGCTGAAATGCTGGAGGCTCGTAGTTGTATACTGCAGCA
GTCTTGAGTAAAATGTTTAGAAGTGGTAGTCTCAGTTAGTTTTGAATGCTGACAAGATATGCTTGTCGACAAGAATGCAG
CTATGTATATAAAGTTACTGAATGGCAATATACTGATCCGCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis