Browse Element(s) Details


Os.27577.1.S1_at

Description gb:AK065031.1
DB_XREF= gi:32975049
TID=Os.27577.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.11 (P0019D06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001G24, full insert sequence.
FL= gb:AK065031.1 gb:AK062266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0490011/11peptidase M50 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0009416biological_processresponse to light stimulus
GO:0009723biological_processresponse to ethylene stimulus
GO:0009959biological_processnegative gravitropism
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0004222molecular_functionmetalloendopeptidase activity
GO:0017092molecular_functionsterol regulatory element-binding protein site 2 protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27577.1.S1_at--152--5231Chr01:2263642..2263666 (25 bp)
GAATTTCAGCTCTCTTCAACGACGT
LOC_Os01g04900
Os.27577.1.S1_at--1134--1851Chr01:2263624..2263648 (25 bp)
ACGACGTCGCGTTCTACTGGGTGGT
LOC_Os01g04900
Os.27577.1.S1_at--368--9931Chr01:2263610..2263634 (25 bp)
TACTGGGTGGTGCTGATCTTCTTCT
LOC_Os01g04900
Os.27577.1.S1_at--164--1551Chr01:2263523..2263547 (25 bp)
AGCATTGGTGTAGCCATCTTGCTCT
LOC_Os01g04900
Os.27577.1.S1_at--228--4811Chr01:2263503..2263527 (25 bp)
GCTCTTTGGACTTCTTGTCTGCCTA
LOC_Os01g04900
Os.27577.1.S1_at--391--411Chr01:2263421..2263445 (25 bp)
ATCAGTCACAGGTCACAAGCTTTCT
LOC_Os01g04900
Os.27577.1.S1_at--849--1551Chr01:2263404..2263428 (25 bp)
AGCTTTCTTCCTCCCAAATTTATGT
LOC_Os01g04900
Os.27577.1.S1_at--369--1311Chr01:2263370..2263394 (25 bp)
AGATGTATGTAACCTGTCGGCTCCC
LOC_Os01g04900
Os.27577.1.S1_at--283--9451Chr01:2263354..2263378 (25 bp)
TCGGCTCCCTGTTTTATTTATCTTA
LOC_Os01g04900
Os.27577.1.S1_at--599--8031Chr01:2263310..2263334 (25 bp)
GGAGTCTATGAGCTCCATTGCTCCT
LOC_Os01g04900
Os.27577.1.S1_at--1034--5911Chr01:2263262..2263286 (25 bp)
GAGCATTCCTGTGGTAGTTCAGTTG
LOC_Os01g04900
Target Sequence 
GAATTTCAGCTCTCTTCAACGACGTCGCGTTCTACTGGGTGGTGCTGATCTTCTTCTTGCAGAGAGGACCGATTTCCCCT
CTCTCTGAAGAAATAACAGAACCTGAGAACAATTACATCAGCATTGGTGTAGCCATCTTGCTCTTTGGACTTCTTGTCTG
CCTACCCTACCCATTCCCCTTTGATCCATCACAACTAACTGATTTTGACTTGTGAAACAAAATCAGTCACAGGTCACAAG
CTTTCTTCCTCCCAAATTTATGTTAGATGCTGAGATGTATGTAACCTGTCGGCTCCCTGTTTTATTTATCTTAGCCTTGG
TCATAAAGATTTGGAGTCTATGAGCTCCATTGCTCCTTGCAGTAGCAAAATAAAATGCAGGAGCATTCCTGTGGTAGTTC
AGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis