Browse Element(s) Details


OsAffx.20199.1.S1_x_at

Description tigr:9638.m03310
TID=OsAffx.20199.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative peptide transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g049501/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04960Os.35344.18.S1_x_at11/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960Os.35344.3.S1_x_at9/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960OsAffx.22940.5.S1_x_at3/111+2296539..2302125transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20199.1.S1_x_at--596--7651NONE
GGGATGCTCCGCAGTCCGCACCAAG
NONE
OsAffx.20199.1.S1_x_at--321--5031Chr10:19522784..19522808 (25 bp)
GCAGTCCGCACCAAGCGCAGACGGG
NONE
OsAffx.20199.1.S1_x_at--756--8791Chr10:19522814..19522838 (25 bp)
TGTTCTTGGCGCTGTACCTGATCGC
NONE
OsAffx.20199.1.S1_x_at--264--9971Chr10:19522828..19522852 (25 bp)
TACCTGATCGCGCTGGGAACGGGAG
NONE
OsAffx.20199.1.S1_x_at--522--7951Chr10:19522853..19522877 (25 bp)
GGATCAAGCCGTGTGTGTCGTCGTT
NONE
OsAffx.20199.1.S1_x_at--503--7471Chr10:19522865..19522889 (25 bp)
GTGTGTCGTCGTTCGGCGTCGACCA
NONE
OsAffx.20199.1.S1_x_at--1096--5932Chr10:19522926..19522950 (25 bp)
GAGCAGCTTCTTCAACTGGTTCTAA
NONE
OsAffx.20199.1.S1_x_at--1153--2551Chr10:19522939..19523312 (25 bp)
AACTGGTTCTAATACATACGCACGT
NONE
OsAffx.20199.1.S1_x_at--485--10571Chr10:19522945..19523318 (25 bp)
TTCTAATACATACGCACGTCGGGTG
NONE
OsAffx.20199.1.S1_x_at--413--4531Chr10:19523476..19523500 (25 bp)
GCCGCCGCCTTGGACAGAGTGAAGA
NONE
OsAffx.20199.1.S1_x_at--565--9191Chr10:19523612..19523636 (25 bp)
TGCCTAGAGCCACAGAGACAAGAAT
NONE
Target Sequence 
GGGATGCTCCGCAGTCCGCACCAAGCGCAGACGGGGGTGGTGTTCTTGGCGCTGTACCTGATCGCGCTGGGAACGGGAGG
GATCAAGCCGTGTGTGTCGTCGTTCGGCGTCGACCAGTTCGACGAGAACGACGAGGGGGAGAAGCGGAGCAAGAGCAGCT
TCTTCAACTGGTTCTAATACATACGCACGTCGGGTGGGGGTGGGGGTTCGGCATCCCGGCCGTCGTCATGGCCGTCGCCG
TCAGCTTCTTCATCGGCACGCCGCTGTACAGGCACCAGCGGTCCGGGGGCAGCCCGCTAACGAGGATCGTGCAGGTGCTC
GTCGCGTCGGTGAGGAAGTGGGGCGTGGAGGTCGCCGCCGCCTTGGACAGAGTGAAGAGGGTGGGGGGAGACCGGAGGCC
GCCGACGCCTTGCTCCCTTGCTCCCGCCGCCGCTGCCGCCGCCGACGCCTTGCTCCCCTGCTCCCGCCGCCGCTGCCGCC
TTGCTCCCCTGCCTAGAGCCACAGAGACAAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20199.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis