Browse Element(s) Details


Os.4709.1.S1_a_at

Description gb:AK070036.1
DB_XREF= gi:32980060
TID=Os.4709.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transport protein (P0019D06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E09, full insert sequence.
FL= gb:AK105664.1 gb:AK070036.1 gb:AK058745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0495011/11Peptide transporter PTR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04960Os.35344.18.S1_x_at11/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960Os.35344.3.S1_x_at9/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960OsAffx.22940.5.S1_x_at3/111+2296539..2302125transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4709.1.S1_a_at--1098--9091Chr01:2294555..2294579 (25 bp)
TGCTCGTGACCATCGTTACCCATGT
LOC_Os01g04950
Os.4709.1.S1_a_at--211--9671Chr01:2294666..2294690 (25 bp)
TCAGCCTCATCAACTTCGGCGTCTA
LOC_Os01g04950
Os.4709.1.S1_a_at--1--551Chr01:2294698..2294722 (25 bp)
ATCGCCAGCTGGTACACCTACAAGA
LOC_Os01g04950
Os.4709.1.S1_a_at--499--2151Chr01:2294711..2294735 (25 bp)
ACACCTACAAGAAGACGGCGGATTC
LOC_Os01g04950
Os.4709.1.S1_a_at--152--1351Chr01:2294723..2294747 (25 bp)
AGACGGCGGATTCACCGGACGACAA
LOC_Os01g04950
Os.4709.1.S1_a_at--138--4491Chr01:2294758..2294782 (25 bp)
GCCGGAGCAAACTGAGCCACGAGGT
LOC_Os01g04950
Os.4709.1.S1_a_at--80--6151Chr01:2294778..2294802 (25 bp)
GAGGTGAAGCTGATTATGACATACA
LOC_Os01g04950
Os.4709.1.S1_a_at--813--10731Chr01:2294811..2294835 (25 bp)
TTGAACTGAATTGTGGCGTGTGAAT
LOC_Os01g04950
Os.4709.1.S1_a_at--703--151Chr01:2294889..2294913 (25 bp)
ATTAGTGTCGTTTGTGACCTTCAAA
LOC_Os01g04950
Os.4709.1.S1_a_at--573--7371Chr01:2294902..2294926 (25 bp)
GTGACCTTCAAATATGTTATAGTGT
LOC_Os01g04950
Os.4709.1.S1_a_at--787--1111Chr01:2294922..2294946 (25 bp)
AGTGTTCATTGCATTATGTCTGGTA
LOC_Os01g04950
Target Sequence 
TGCTCGTGACCATCGTTACCCATGTCACCACCCGGAACGGCGCCGTCGGGTGGATCCCGGACAACCTCAACCGCGGCCAC
CTCGACTACTTCTTCTGGCTGCTCGCCGTGCTCAGCCTCATCAACTTCGGCGTCTACCTCGTCATCGCCAGCTGGTACAC
CTACAAGAAGACGGCGGATTCACCGGACGACAAGGCCGAGCACGCCGGAGCAAACTGAGCCACGAGGTGAAGCTGATTAT
GACATACAAGGGGGAATTGAACTGAATTGTGGCGTGTGAATGTCAGAATGTGTGGGGTTCTAAACAAGTTCTTGGGAGAT
AAAATGGAAAGGAAATTAGTGTCGTTTGTGACCTTCAAATATGTTATAGTGTTCATTGCATTATGTCTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4709.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis