Browse Element(s) Details


Os.1619.2.S1_at

Description gb:NM_184317.1
DB_XREF= gi:34895713
GEN=P0019D06.14
TID=Os.1619.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1619 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative myb-related transcription activator (P0019D06.14), mRNA.
PROD=putative myb-related transcription activator
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g049301/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04960Os.35344.18.S1_x_at11/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960Os.35344.3.S1_x_at9/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960OsAffx.22940.5.S1_x_at3/111+2296539..2302125transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1619.2.S1_at--210--10211Chr01:2279646..2279670 (25 bp)
TATTTCATCAGGCTCAACTCCGGTG
LOC_Os01g04930
Os.1619.2.S1_at--217--51NONE
ATTGCAGTGTGGTGGGCAAAAACAA
NONE
Os.1619.2.S1_at--277--2411Chr01:2278110..2278134 (25 bp)
AAACAAAGTGGCCACTCACTCTCTG
NONE
Os.1619.2.S1_at--454--8451Chr01:2278101..2278125 (25 bp)
GGCCACTCACTCTCTGATGATGGAA
NONE
Os.1619.2.S1_at--376--3331Chr01:2278094..2278118 (25 bp)
CACTCTCTGATGATGGAAGGCACTG
NONE
Os.1619.2.S1_at--884--8511Chr01:2278081..2278105 (25 bp)
TGGAAGGCACTGTTGCATAGAACCT
NONE
Os.1619.2.S1_at--973--4951Chr01:2278067..2278091 (25 bp)
GCATAGAACCTTCTGGTCTCATGTG
NONE
Os.1619.2.S1_at--783--10591Chr01:2278057..2278081 (25 bp)
TTCTGGTCTCATGTGGTTGCTGCTG
NONE
Os.1619.2.S1_at--218--8971Chr01:2278030..2278054 (25 bp)
TGAAATTCTTCAGGCCTATACTACT
NONE
Os.1619.2.S1_at--206--891Chr01:2278019..2278043 (25 bp)
AGGCCTATACTACTGGCTTTTCCAT
NONE
Os.1619.2.S1_at--1084--311Chr01:2278013..2278037 (25 bp)
ATACTACTGGCTTTTCCATGTCACC
NONE
Target Sequence 
TATTTCATCAGGCTCAACTCCGGTGGCAAGGACAAGAGGAGATCCAGCATCCATGACATTACCACGGTTAACCTGACGGA
TGACCGGCCTCCCTCGCCATCACAGTCCTCCTTGATCAGCAATCAGTCCAACACATCAACTCTGACCGCAGCGGTTGCCC
CCTTCTCATCGACGGCCGATGTCAAGCCACAGAATGCCGCGAATGCGTCCTTCAATTCGCCAAGCCGGACACTTGGGATG
GCGGGTTACGGGATGGGATTGCAAGATCAAGGATTGCAGTGTGGTGGGCAAAAACAAAGTGGCCACTCACTCTCTGATGA
TGGAAGGCACTGTTGCATAGAACCTTCTGGTCTCATGTGGTTGCTGCTGCTTGAAATTCTTCAGGCCTATACTACTGGCT
TTTCCATGTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1619.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis