Browse Element(s) Details


Os.1617.1.S1_at

Description gb:AK103082.1
DB_XREF= gi:32988291
TID=Os.1617.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.12 (P0019D06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118F12, full insert sequence.
FL= gb:AK103082.1 gb:AK109417.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0491011/11My019 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1617.1.S1_at--321--2651Chr01:2269601..2269621 (21 bp)
AACCAGCCACAGATCCTGAAGCATT
LOC_Os01g04910
Os.1617.1.S1_at--84--2511Chr01:2269737..2269761 (25 bp)
AACTATCAATATCTACACTGCCCGA
LOC_Os01g04910
Os.1617.1.S1_at--537--6351Chr01:2269790..2270115 (25 bp)
GATGCCCTTTGAGTGACATCACGGA
LOC_Os01g04910
Os.1617.1.S1_at--1040--871Chr01:2270134..2270158 (25 bp)
AGGCCTGGTGGTTTTTTGCACATGA
LOC_Os01g04910
Os.1617.1.S1_at--78--7471Chr01:2270163..2270187 (25 bp)
GTGGTACCGGTATGTTTGTTACTGT
LOC_Os01g04910
Os.1617.1.S1_at--618--1951Chr01:2270209..2270233 (25 bp)
ACTGGACTACTGGTGCCTTGGGTTC
LOC_Os01g04910
Os.1617.1.S1_at--247--5071Chr01:2270255..2270279 (25 bp)
GCAGCTGTCGTTTCTGTCCAAGAGA
LOC_Os01g04910
Os.1617.1.S1_at--702--10731Chr01:2270387..2270411 (25 bp)
TTGAAATTCAAGAACCCCACTGGTT
LOC_Os01g04910
Os.1617.1.S1_at--401--10351Chr01:2270424..2270448 (25 bp)
TTTTTGGCCAAAACACTCTGCTGTG
LOC_Os01g04910
Os.1617.1.S1_at--83--6911Chr01:2270488..2270512 (25 bp)
GTATCATTATCTTGCTCATCAGTTC
LOC_Os01g04910
Os.1617.1.S1_at--862--7611Chr01:2270524..2270548 (25 bp)
GGGACAACAGCCACCAAGTTTTATT
LOC_Os01g04910
Target Sequence 
AACCAGCCACAGATCCTGAAGCATTATAAAATAACTCCCCAGGAACTATCAATATCTACACTGCCCGATGCAATTGTATG
CAGGATTGCTGCTCGAGATGCCCTTTGAGTGACATCACGGATCAAGATTGAAATCTGGGAGGCCTGGTGGTTTTTTGCAC
ATGATGATGTGGTACCGGTATGTTTGTTACTGTATGATGATGGTTGCTAGTACTACTGGACTACTGGTGCCTTGGGTTCA
CGTGCTGCTGGGACAGCGTTGCAGCTGTCGTTTCTGTCCAAGAGAAAAACATGGACAGAGAAGCTGGTAACCTGCCCGNC
ATTGCAGCTGTTACTGCAAATTCCAGTTCAATGTTTTCTTTTGCATGATCCATCAATCTATCATGCATGTAATTTGAAAT
TCAAGAACCCCACTGGTTTTGTTTTTTGTTTTTTTGGCCAAAACACTCTGCTGTGTTCTGTTTGTTTTTGGAGTCTGTAT
GATGGTATCTGTCAGTATCATTATCTTGCTCATCAGTTCNTCTATCAATTGGGACAACAGCCACCAAGTTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis