Browse Element(s) Details


Os.5236.1.S1_at

Description gb:AK070848.1
DB_XREF= gi:32980871
TID=Os.5236.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019D06.9 (P0019D06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068G12, full insert sequence.
FL= gb:AK070848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5236.1.S1_at--31--811Chr01:2262627..2262651 (25 bp)
ATGGGTTCCTATTCTCATATGTAGT
LOC_Os01g04880
Os.5236.1.S1_at--246--10811Chr01:2262655..2262679 (25 bp)
TTGGGTGTCCAATATTTATCCGGTT
LOC_Os01g04880
Os.5236.1.S1_at--298--9631Chr01:2262683..2262707 (25 bp)
TCATGTTATGTTGCGAGCTGCTCCA
LOC_Os01g04880
Os.5236.1.S1_at--835--1591Chr01:2262698..2262722 (25 bp)
AGCTGCTCCATGTGCAACTTTATTC
LOC_Os01g04880
Os.5236.1.S1_at--768--9771Chr01:2262798..2262822 (25 bp)
TAAGTTAGGTCTTCTTAGCCCCTTG
LOC_Os01g04880
Os.5236.1.S1_at--584--9991Chr01:2262813..2262837 (25 bp)
TAGCCCCTTGAGTCTTTGACACCAT
LOC_Os01g04880
Os.5236.1.S1_at--1141--5631Chr01:2262830..2262854 (25 bp)
GACACCATCTTGTAGCGGATTTCGC
LOC_Os01g04880
Os.5236.1.S1_at--881--2151Chr01:2262858..2262882 (25 bp)
ACAGCCTGGTAGTCACATGTGTTTC
LOC_Os01g04880
Os.5236.1.S1_at--948--9291Chr01:2262881..2262905 (25 bp)
TCCCCGGCTGAACTGTATTGACATT
LOC_Os01g04880
Os.5236.1.S1_at--779--10371Chr01:2262964..2262988 (25 bp)
TTTTCTCAGGAGACAGTCACTGCTG
LOC_Os01g04880
Os.5236.1.S1_at--1092--7091Chr01:2262979..2263003 (25 bp)
GTCACTGCTGCCGTAAAACTGTTGC
LOC_Os01g04880
Target Sequence 
ATGGGTTCCTATTCTCATATGTAGTTCATTGGGTGTCCAATATTTATCCGGTTTATTCATGTTATGTTGCGAGCTGCTCC
ATGTGCAACTTTATTCTGGACCTTATATGCTATTGAAAAGCGTCTTTTATGTGTTCAGTCCTTGAGTATCATTTTCAGTA
CTTTGGGAGTTTAAGTTAGGTCTTCTTAGCCCCTTGAGTCTTTGACACCATCTTGTAGCGGATTTCGCGCTACAGCCTGG
TAGTCACATGTGTTTCCCCGGCTGAACTGTATTGACATTTTTCTCTGTTGTTGTATCAGCAATGTAAATTTAGTAGCATT
TTTTCTTTCAAGTAATATTTTCTCAGGAGACAGTCACTGCTGCCGTAAAACTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis