Browse Element(s) Details


Os.11870.1.S1_at

Description gb:AK060202.1
DB_XREF= gi:32970220
TID=Os.11870.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SqdX protein (P0019D06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G08, full insert sequence.
FL= gb:AK060202.1 gb:AK072289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0492011/11glycosyl transferase, group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein
LOC_Os01g04870Os.28010.1.S1_at10/111+2247622..2251875transducin family protein, putative, expressed
LOC_Os01g04880Os.5236.1.S1_at11/111+2258287..2263067expressed protein
LOC_Os01g04900Os.27577.1.S1_at11/111+2263083..2267853peptidase M50 family protein, putative, expressed
LOC_Os01g04910Os.1617.1.S1_at11/111+2267965..2270558My019 protein, putative, expressed
LOC_Os01g04920Os.11870.1.S1_at11/111+2271958..2275662glycosyl transferase, group 1 family protein, expressed
LOC_Os01g04930Os.1619.1.S1_at11/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04930Os.1619.2.S1_at1/111+2278336..2281577Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g04950Os.4709.1.S1_a_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950Os.49974.1.S1_at11/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04950OsAffx.20199.1.S1_x_at1/111+2288913..2295131Peptide transporter PTR2, putative, expressed
LOC_Os01g04960Os.35344.18.S1_x_at11/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960Os.35344.3.S1_x_at9/111+2296539..2302125transposon protein, putative, Mutator sub-class
LOC_Os01g04960OsAffx.22940.5.S1_x_at3/111+2296539..2302125transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0046506biological_processsulfolipid biosynthesis
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0046510molecular_functionUDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11870.1.S1_at--892--2871Chr01:2275094..2275118 (25 bp)
AAGGGAAGACCAGCTTCCTGTTCAC
LOC_Os01g04920
Os.11870.1.S1_at--1127--5991Chr01:2275124..2275148 (25 bp)
GAGACCTCGAAGACTGTCTTGGCAA
LOC_Os01g04920
Os.11870.1.S1_at--881--5351Chr01:2275245..2275269 (25 bp)
GAAGATCCGCAACGAGTTCTACAAT
LOC_Os01g04920
Os.11870.1.S1_at--649--6451Chr01:2275308..2275332 (25 bp)
GATCAAACCGTTGCAGTGGCTGGCG
LOC_Os01g04920
Os.11870.1.S1_at--243--3431Chr01:2275333..2275357 (25 bp)
CAGATGTTCCTACCAGCACCTGAGG
LOC_Os01g04920
Os.11870.1.S1_at--68--5251Chr01:2275364..2275388 (25 bp)
GAATCACACAACACTGAAGCCTCAA
LOC_Os01g04920
Os.11870.1.S1_at--1111--9031Chr01:2275400..2275424 (25 bp)
TGCAGCCATGATCCGGTCCTTGTAA
LOC_Os01g04920
Os.11870.1.S1_at--888--4251Chr01:2275412..2275436 (25 bp)
CCGGTCCTTGTAAATTTCTGATCTA
LOC_Os01g04920
Os.11870.1.S1_at--1147--2351Chr01:2275507..2275531 (25 bp)
AAAGCCATTTGTTGCCTGTATTGTT
LOC_Os01g04920
Os.11870.1.S1_at--787--2231Chr01:2275539..2275563 (25 bp)
ACAATGTGTTGCCTTGTTGGGACAT
LOC_Os01g04920
Os.11870.1.S1_at--196--3231Chr01:2275609..2275633 (25 bp)
CAAGATGCTATTGTGCACGCAATGA
LOC_Os01g04920
Target Sequence 
AAGGGAAGACCAGCTTCCTGTTCACCCCAGGAGACCTCGAAGACTGTCTTGGCAAGATTCAGCTATTGCTGACGGACAAG
GAATTCAGAGACAACATGGGGATGACGGCTAGAGCCGAGATGGAGAAGTGCGACTGGAGAGCAGCTTCCAAGAAGATCCG
CAACGAGTTCTACAATGCTGCNATCTGGTACTGGAGGAAGAAGCGCGCAGAATTGATCAAACCGTTGCAGTGGCTGGCGC
AGATGTTCCTACCAGCACCTGAGGNCAACAGAATCACACAACACTGAAGCCTCAAGGGGATGCTTCTGCAGCCATGATCC
GGTCCTTGTAAATTTCTGATCTATAGTGCAGTGTCAATAGGTGAGATAGTTCCTCTTTTTTTTGTATGGAATTGGAATTG
TGAATGGTATGGCAAAGCCATTTGTTGCCTGTATTGTTGTAGTGGACAATGTGTTGCCTTGTTGGGACATGATGTGATGA
ACTGTATTTGATTATAATCCACGGCATCAACACATCAAGATGCTATTGTGCACGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis