Browse Element(s) Details


OsAffx.22787.1.S1_at

Description tigr:9629.m00403
TID=OsAffx.22787.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0483011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04800Os.27299.1.A1_at11/111+2199080..2200626B3 DNA binding domain containing protein, expressed
LOC_Os01g04814Os.7385.2.S1_a_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04814OsAffx.23116.2.S1_at11/111+2212433..2219616Vacuolar protein sorting-associated protein VPS4, putative, expressed
LOC_Os01g04830OsAffx.22787.1.S1_at11/111+2221485..2221862hypothetical protein
LOC_Os01g04840OsAffx.23116.1.S1_at10/111+2222802..2226328Vacuolar sorting protein 4b, putative
LOC_Os01g04850OsAffx.30457.3.S1_s_at1/111+2230438..2231310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g04860Os.38312.2.S1_x_at11/111+2242534..2247237expressed protein
LOC_Os01g04860Os.38312.1.S1_at11/111+2242534..2247237expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22787.1.S1_at--782--8391Chr01:2221544..2221568 (25 bp)
GGCGCTGCTGTTCACGGACGCCATC
LOC_Os01g04830
OsAffx.22787.1.S1_at--608--9371Chr01:2221608..2221632 (25 bp)
TCGACCCAACCAACACCTGTGGAAG
LOC_Os01g04830
OsAffx.22787.1.S1_at--973--1791Chr01:2221611..2221635 (25 bp)
ACCCAACCAACACCTGTGGAAGGCG
LOC_Os01g04830
OsAffx.22787.1.S1_at--357--2951Chr01:2221630..2221654 (25 bp)
AAGGCGCGCGCCTGCATCAGCCGAG
LOC_Os01g04830
OsAffx.22787.1.S1_at--1110--3631Chr01:2221687..2221711 (25 bp)
CTTCGCTCGCCTCATGGACGGAGGA
LOC_Os01g04830
OsAffx.22787.1.S1_at--688--1591Chr01:2221711..2221735 (25 bp)
AGCTCCGCGACAAGTCGGCGGCTAC
LOC_Os01g04830
OsAffx.22787.1.S1_at--676--2851Chr01:2221722..2221746 (25 bp)
AAGTCGGCGGCTACTGACGATGCTC
LOC_Os01g04830
OsAffx.22787.1.S1_at--954--3931Chr01:2221726..2221750 (25 bp)
CGGCGGCTACTGACGATGCTCGGAA
LOC_Os01g04830
OsAffx.22787.1.S1_at--378--9891Chr01:2221733..2221757 (25 bp)
TACTGACGATGCTCGGAAAGGCGGC
LOC_Os01g04830
OsAffx.22787.1.S1_at--418--1071Chr01:2221759..2221783 (25 bp)
AGGGATCCGGCATGATCGAGACGTC
LOC_Os01g04830
OsAffx.22787.1.S1_at--1119--6351Chr01:2221762..2221786 (25 bp)
GATCCGGCATGATCGAGACGTCGAC
LOC_Os01g04830
Target Sequence 
GGCGCTGCTGTTCACGGACGCCATCCACGCCGGCCAGCGCCGGCACGACGCAGGGCAGCCGACCTCGACCCAACCAACAC
CTGTGGAAGGCGCGCGCCTGCATCAGCCGAGGCCGGCGCTGCGCTGCTGCCGGGAGACCCGCGCTTCGCTCGCCTCATGG
ACGGAGGAGCTCCGCGACAAGTCGGCGGCTACTGACGATGCTCGGAAAGGCGGCGAGGGATCCGGCATGATCGAGACGTC
GAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis