Browse Element(s) Details


Os.53957.1.S1_at

Description gb:AK101014.1
DB_XREF= gi:32986223
TID=Os.53957.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149B20, full insert sequence.
FL= gb:AK101014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5264011/11Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52580Os.50047.1.S1_at1/112+32166812..32170278retrotransposon protein, putative, unclassified
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed
LOC_Os02g52660OsAffx.12615.1.S1_at9/112+32196645..32197700hypothetical protein
LOC_Os02g52670Os.54944.1.S1_at11/112+32198556..32199466AP2 domain containing protein, expressed
LOC_Os02g52680OsAffx.19542.3.S1_x_at7/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680OsAffx.9949.1.S1_at1/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53957.1.S1_at--566--7591Chr02:32193044..32193068 (25 bp)
GGGAACATCCAACCACGAACGGTGA
LOC_Os02g52640
Os.53957.1.S1_at--1--5471Chr02:32193060..32193084 (25 bp)
GAACGGTGAGATGATCAGCTTCCAC
LOC_Os02g52640
Os.53957.1.S1_at--1021--1551Chr02:32193163..32193187 (25 bp)
AGCTTATCTGATGTTATGGTCACCA
LOC_Os02g52640
Os.53957.1.S1_at--324--1711Chr02:32193184..32193208 (25 bp)
ACCAGTGCTTGGTCAACCTTTGGGT
LOC_Os02g52640
Os.53957.1.S1_at--384--1731Chr02:32193199..32193223 (25 bp)
ACCTTTGGGTATGTTGCTCAGGGTC
LOC_Os02g52640
Os.53957.1.S1_at--726--3471Chr02:32193217..32193241 (25 bp)
CAGGGTCTCAGTGGTTTGAGGCCAT
LOC_Os02g52640
Os.53957.1.S1_at--1112--8411Chr02:32193236..32193260 (25 bp)
GGCCATGGCTATTATTCAAGCCCGA
LOC_Os02g52640
Os.53957.1.S1_at--231--3631Chr02:32193284..32193308 (25 bp)
CTTGCCGTCAAGTTTTGTCCATGGA
LOC_Os02g52640
Os.53957.1.S1_at--942--10251Chr02:32193297..32193321 (25 bp)
TTTGTCCATGGAACCTTGCTTTCAT
LOC_Os02g52640
Os.53957.1.S1_at--389--631Chr02:32193320..32193344 (25 bp)
ATGCTCCACCTTTCTATGATTGCAA
LOC_Os02g52640
Os.53957.1.S1_at--213--5571Chr02:32193368..32193392 (25 bp)
GAAAGTTTGTCCCATATGTAAGTCA
LOC_Os02g52640
Target Sequence 
GGGAACATCCAACCACGAACGGTGAGATGATCAGCTTCCACCAGCCAAGCCATGAGGAACATCAGAACTCAGACAAGAAA
ATGCATAACATGAAAGCATGGGCTGAGATTTATCTGTTAAGCTTATCTGATGTTATGGTCACCAGTGCTTGGTCAACCTT
TGGGTATGTTGCTCAGGGTCTCAGTGGTTTGAGGCCATGGCTATTATTCAAGCCCGAAAACCGCATCGCACCTGATCCAC
CTTGCCGTCAAGTTTTGTCCATGGAACCTTGCTTTCATGCTCCACCTTTCTATGATTGCAAAGCAAAGAGGGGAGCTGAT
ACTGGAAAGTTTGTCCCATATGTAAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis