Browse Element(s) Details


Os.54944.1.S1_at

Description gb:AK107146.1
DB_XREF= gi:32992355
TID=Os.54944.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D09, full insert sequence.
FL= gb:AK107146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5267011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed
LOC_Os02g52660OsAffx.12615.1.S1_at9/112+32196645..32197700hypothetical protein
LOC_Os02g52670Os.54944.1.S1_at11/112+32198556..32199466AP2 domain containing protein, expressed
LOC_Os02g52680OsAffx.19542.3.S1_x_at7/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680OsAffx.9949.1.S1_at1/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52690OsAffx.22848.3.S1_x_at10/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_at2/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52690OsAffx.22848.4.S1_x_at1/112+32221789..32228954retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54944.1.S1_at--1115--4551Chr02:32198930..32198954 (25 bp)
GCGCCGTCTGCAAGTGGCTCGGCAC
LOC_Os02g52670
Os.54944.1.S1_at--980--371Chr02:32198783..32198807 (25 bp)
ATCACAACCTCCGTGAGAACTGCGG
LOC_Os02g52670
Os.54944.1.S1_at--310--5971Chr02:32198769..32198793 (25 bp)
GAGAACTGCGGCTCGAACGCGTCGT
LOC_Os02g52670
Os.54944.1.S1_at--1075--9451Chr02:32198687..32198711 (25 bp)
TCTGGGACGGCCTACGGGAGATCAT
LOC_Os02g52670
Os.54944.1.S1_at--242--8431Chr02:32198679..32198703 (25 bp)
GGCCTACGGGAGATCATGATGCTCG
LOC_Os02g52670
Os.54944.1.S1_at--917--1551Chr02:32198646..32198670 (25 bp)
AGCTTCTGGTCCATGCCATGATCGA
LOC_Os02g52670
Os.54944.1.S1_at--631--711Chr02:32198629..32198653 (25 bp)
ATGATCGATGATCTGTCACCCATTT
LOC_Os02g52670
Os.54944.1.S1_at--862--6291Chr02:32198623..32198647 (25 bp)
GATGATCTGTCACCCATTTCATTGC
LOC_Os02g52670
Os.54944.1.S1_at--420--1811Chr02:32198612..32198636 (25 bp)
ACCCATTTCATTGCTCGATCGTTGC
LOC_Os02g52670
Os.54944.1.S1_at--733--10551Chr02:32198582..32198606 (25 bp)
TTCTTGTTCCATTCTTAATAGGATT
LOC_Os02g52670
Os.54944.1.S1_at--475--10071Chr02:32198564..32198588 (25 bp)
TAGGATTCTTAAACCTTTACTACTG
LOC_Os02g52670
Target Sequence 
GCGCCGTCTGCAAGTGGCTCGGCACGTTCGACACCGCCGAGGACGCCGCGCGCGCCTACGACGTCGCCGCGCTCGAGTTC
CGCGGCCAGCGCGCCAAGCTCAACTTCCCGGCGTCCACGGCCGCGCAGCAGCCACGTCCACTCCTCCATCACAACCTCCG
TGAGAACTGCGGCTCGAACGCGTCGTCGCCGGTGCACGCGCCAGAGCACGCGAGGACGGCGGCGGCGGCGAAGGACCAGG
AGATCTGGGACGGCCTACGGGAGATCATGATGCTCGACGACGGCAGCTTCTGGTCCATGCCATGATCGATGATCTGTCAC
CCATTTCATTGCTCGATCGTTGCTTCATTTCTTGTTCCATTCTTAATAGGATTCTTAAACCTTTACTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis