Browse Element(s) Details


Os.49612.1.S1_at

Description gb:AK102499.1
DB_XREF= gi:32987708
TID=Os.49612.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095B15, full insert sequence.
FL= gb:AK102499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5263011/11fucosyltransferase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52560Os.20701.1.S1_at11/112+32158655..32161949Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52570Os.43567.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52570Os.38172.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52580Os.50047.1.S1_at1/112+32166812..32170278retrotransposon protein, putative, unclassified
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed
LOC_Os02g52660OsAffx.12615.1.S1_at9/112+32196645..32197700hypothetical protein
LOC_Os02g52670Os.54944.1.S1_at11/112+32198556..32199466AP2 domain containing protein, expressed
LOC_Os02g52680OsAffx.19542.3.S1_x_at7/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680OsAffx.9949.1.S1_at1/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49612.1.S1_at--596--971Chr02:32187599..32187623 (25 bp)
AGGAGTACCAGCACTTCGGCGAGAA
LOC_Os02g52630
Os.49612.1.S1_at--767--10611Chr02:32187613..32187637 (25 bp)
TTCGGCGAGAAGTCGCACGACGGCA
LOC_Os02g52630
Os.49612.1.S1_at--427--1311Chr02:32187650..32187674 (25 bp)
AGATGTACCTCCTGAGCCTGTGCGA
LOC_Os02g52630
Os.49612.1.S1_at--864--751Chr02:32187748..32187772 (25 bp)
ATGTACAAGCCGGTGAACATCACGG
LOC_Os02g52630
Os.49612.1.S1_at--183--6731Chr02:32187834..32187858 (25 bp)
GTTCTACGACTGCAAGACGAAGCGC
LOC_Os02g52630
Os.49612.1.S1_at--1075--1071Chr02:32187861..32187885 (25 bp)
AGTGGACACCGGGACAATACTGCCC
LOC_Os02g52630
Os.49612.1.S1_at--811--10731Chr02:32187919..32187943 (25 bp)
TTGAAGCTTGTTGATCCGAATGGAA
LOC_Os02g52630
Os.49612.1.S1_at--209--8191Chr02:32187940..32187964 (25 bp)
GGAAGTCCGAACTAGTACAACTGTA
LOC_Os02g52630
Os.49612.1.S1_at--339--1151Chr02:32187953..32187977 (25 bp)
AGTACAACTGTATAAGGCTTCATGC
LOC_Os02g52630
Os.49612.1.S1_at--907--8291Chr02:32187968..32187992 (25 bp)
GGCTTCATGCTGCAAAAGCAAACTT
LOC_Os02g52630
Os.49612.1.S1_at--26--5351Chr02:32188038..32188062 (25 bp)
GAAGAAAAGACCACCGGAATGTTAT
LOC_Os02g52630
Target Sequence 
AGGAGTACCAGCACTTCGGCGAGAAGTCGCACGACGGCAAGGCGTGGGCGGAGATGTACCTCCTGAGCCTGTGCGACGTG
CTGGTGACCAGCGGCTGGTCGACGTTCGGGTACGTGGCGCAGGGGCTCGGCGGGCTGAGGCCGTGGGTGATGTACAAGCC
GGTGAACATCACGGCGGTGCCGGACCCGCCGTGCGGACGGGACGTGTCCATGGAGCCGTGCTTCCACTCGCCGCCGTTCT
ACGACTGCAAGACGAAGCGCGGAGTGGACACCGGGACAATACTGCCCCACGTTCGGCACTGCGACGACGTGAGCTGGGGA
TTGAAGCTTGTTGATCCGAATGGAAGTCCGAACTAGTACAACTGTATAAGGCTTCATGCTGCAAAAGCAAACTTTACAAA
GATTTCATTTGCATGTTTTTTTTTTGGGCCGGGATGGCCGAAGAAAAGACCACCGGAATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis