Browse Element(s) Details


Os.8514.1.S1_at

Description gb:AK066291.1
DB_XREF= gi:32976309
TID=Os.8514.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013064F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064F21, full insert sequence.
FL= gb:AK061711.1 gb:AK066291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5265011/11Chlorophyll A-B binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52580Os.50047.1.S1_at1/112+32166812..32170278retrotransposon protein, putative, unclassified
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed
LOC_Os02g52660OsAffx.12615.1.S1_at9/112+32196645..32197700hypothetical protein
LOC_Os02g52670Os.54944.1.S1_at11/112+32198556..32199466AP2 domain containing protein, expressed
LOC_Os02g52680OsAffx.19542.3.S1_x_at7/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g52680OsAffx.9949.1.S1_at1/112+32209795..32215415retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8514.1.S1_at--564--7751Chr02:32194577..32194601 (25 bp)
GGTGCAACAAAATTCGACTTCGCTA
LOC_Os02g52650
Os.8514.1.S1_at--172--3691Chr02:32194537..32194560 (24 bp)
CTTTGTCCAGCTTCTCTTGATGGGA
LOC_Os02g52650
Os.8514.1.S1_at--383--2071Chr02:32194310..32194334 (25 bp)
ACATTCCTTGGTATCGAGGCTGCAC
LOC_Os02g52650
Os.8514.1.S1_at--1093--2051Chr02:32194291..32194311 (21 bp)
ACTTGCAGGTTCACAGCCAGGCTAC
LOC_Os02g52650
Os.8514.1.S1_at--667--7691Chr02:32194150..32194174 (25 bp)
GGGTCCACTGTTTAATCCACTAGGA
LOC_Os02g52650
Os.8514.1.S1_at--513--4871Chr02:32193972..32193996 (25 bp)
GCTATGGTTGCTATGCTTGGGTTTA
LOC_Os02g52650
Os.8514.1.S1_at--604--3891Chr02:32193935..32193959 (25 bp)
CTGTGACTCATGTTGGACCAATCGA
LOC_Os02g52650
Os.8514.1.S1_at--405--10331Chr02:32193905..32193929 (25 bp)
TTTTGACACATCTTTCAGACCCGTT
LOC_Os02g52650
Os.8514.1.S1_at--1130--10131Chr02:32193840..32193864 (25 bp)
TATCCTGGACCGTCAAACTTTTTGT
LOC_Os02g52650
Os.8514.1.S1_at--599--1171Chr02:32193754..32193778 (25 bp)
AGTAACTCACTACGCAATTGCCAAG
LOC_Os02g52650
Os.8514.1.S1_at--745--6051Chr02:32193710..32193734 (25 bp)
GAGATTCACCGGATGCATAACTACA
LOC_Os02g52650
Target Sequence 
GGTGCAACAAAATTCGACTTCGCTAACACCACGGCACTCTTCTTTGTCCAGCTTCTCTTGATGGGATTTGCTGAAACCAA
GAGGTACATGGACTTTATCAATCCAGGATCACAAGCAGAGGAAGGAACATTCCTTGGTATCGAGGCTGCACTTGCAGGTT
CACAGCCAGGCTACCCTGGGGGTCCACTGTTTAATCCACTAGGACTGGCCAAGGATATAGAGAATGCAGATGAAGCGAAA
CTGAAAGAAATCAAGAATGGGAGGTTGGCTATGGTTGCTATGCTTGGGTTTATTGTGCAAGCATCTGTGACTCATGTTGG
ACCAATCGACAATCTTTTGACACATCTTTCAGACCCGTTCAACAAAAATATCATCCACACCCTCTCCTCTTCTTGAAAAT
ATCCTGGACCGTCAAACTTTTTGTTCCTTTCTTCATCTTAATTAATCTATCAATCAACACATTCACAATGTTCGTGGACA
ACATAAGTAACTCACTACGCAATTGCCAAGTCCATGTGTTATGAAAATGGAGATTCACCGGATGCATAACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis