Browse Element(s) Details


Os.55764.1.S1_at

Description gb:AK108759.1
DB_XREF= gi:32993968
TID=Os.55764.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G04, full insert sequence.
FL= gb:AK108759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5259011/11Xyloglucan fucosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52550Os.47727.1.S1_s_at11/112+32149366..32150504expressed protein
LOC_Os02g52560Os.20701.1.S1_at11/112+32158655..32161949Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52570Os.43567.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52570Os.38172.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52580Os.50047.1.S1_at1/112+32166812..32170278retrotransposon protein, putative, unclassified
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52620Os.27299.1.A1_at1/112+32183382..32184192expressed protein
LOC_Os02g52630Os.49612.1.S1_at11/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52630OsAffx.15364.2.S1_x_at2/112+32185381..32188111fucosyltransferase 7, putative, expressed
LOC_Os02g52640Os.53957.1.S1_at11/112+32191175..32193617Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52650Os.8514.1.S1_at11/112+32193673..32195773Chlorophyll A-B binding protein, expressed
LOC_Os02g52660OsAffx.12615.1.S1_at9/112+32196645..32197700hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55764.1.S1_at--797--1271Chr02:32172664..32172688 (25 bp)
AGATCATCCGGTGCTCGGAGCAGGA
LOC_Os02g52590
Os.55764.1.S1_at--1023--7671Chr02:32172690..32172714 (25 bp)
GGGTTGCTGCCCAAGCTAGGACAGA
LOC_Os02g52590
Os.55764.1.S1_at--270--1571Chr02:32172703..32172727 (25 bp)
AGCTAGGACAGACGGTCGTCGTCAC
LOC_Os02g52590
Os.55764.1.S1_at--704--4511Chr02:32172755..32172779 (25 bp)
GCCGAGCACGAAGCTGACTTCCATA
LOC_Os02g52590
Os.55764.1.S1_at--28--1611Chr02:32172766..32172790 (25 bp)
AGCTGACTTCCATACTGGTGACGTC
LOC_Os02g52590
Os.55764.1.S1_at--89--8591Chr02:32172781..32172805 (25 bp)
TGGTGACGTCGCTGTTCCCGGACTA
LOC_Os02g52590
Os.55764.1.S1_at--139--1271Chr02:32172937..32172961 (25 bp)
AGATATACCTGCTGAGCTTCTGCGA
LOC_Os02g52590
Os.55764.1.S1_at--619--1891Chr02:32172987..32173011 (25 bp)
ACGTTCGGGTACATCGCGCACGGGC
LOC_Os02g52590
Os.55764.1.S1_at--271--8611Chr02:32173165..32173189 (25 bp)
TGGTGCCTCATATCCGGCATTGCGA
LOC_Os02g52590
Os.55764.1.S1_at--589--9691Chr02:32173207..32173231 (25 bp)
TCAAACTGTTTAGCTAGCGCTTTAA
LOC_Os02g52590
Os.55764.1.S1_at--527--1651Chr02:32173222..32173246 (25 bp)
AGCGCTTTAATCTGTCTGCGTAATT
LOC_Os02g52590
Target Sequence 
AGATCATCCGGTGCTCGGAGCAGGAGGGGTTGCTGCCCAAGCTAGGACAGACGGTCGTCGTCACCGCGGCGAACGGCTCG
TCGGTGGTGGCGCCGAGCACGAAGCTGACTTCCATACTGGTGACGTCGCTGTTCCCGGACTACTACGACCGCATCCGCGG
CGTGTACCACGCGAGGCCGACGGAGACGGGGGAGTACGTAGCGGTGCACCAGCCGAGCCACGAGCGGGAGCAGCGCACGG
AGGCGCGCGGCCACAACCAGCGCGCGCTGGCCGAGATATACCTGCTGAGCTTCTGCGACCGCGTCGTGACGAGCGCCGTG
TCGACGTTCGGGTACATCGCGCACGGGCTAGCCGGGGTGCGGCCGTGGGTGTTGCTGCGGCCGCCGTCCCCGGTGGCGCG
CGCCGAGCCGGCGTGCGTCCGGTCGGAGACCGTCGAGCCGTGCCTGCAGGCGCTGCCTCGACGGATGTGCGGCGCGGCGG
AAGGCAGTGACATTGGGGCTCTGGTGCCTCATATCCGGCATTGCGAGGATGTACAAAAAGGTATCAAACTGTTTAGCTAG
CGCTTTAATCTGTCTGCGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis