Browse Element(s) Details


Os.47727.1.S1_s_at

Description gb:AU068794
DB_XREF= gi:5003645
DB_XREF=AU068794
CLONE=C50567_10Z
TID=Os.47727.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47727 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172940.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52510OsAffx.12611.1.S1_at10/112+32120055..32128825DNA repair protein RAD54, putative
LOC_Os02g52520NANA2+32130555..32136709retrotransposon protein, putative, unclassified
LOC_Os02g52530NANA2+32137337..32140628retrotransposon protein, putative, unclassified
LOC_Os02g52540NANA2+32144206..32144508EF hand family protein
LOC_Os02g52550Os.47727.1.S1_s_at11/112+32149366..32150504expressed protein
LOC_Os02g52560Os.20701.1.S1_at11/112+32158655..32161949Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52570Os.43567.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52570Os.38172.1.S1_x_at2/112+32163252..32163946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g52580Os.50047.1.S1_at1/112+32166812..32170278retrotransposon protein, putative, unclassified
LOC_Os02g52590Os.55764.1.S1_at11/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590OsAffx.15364.2.S1_x_at1/112+32171248..32173253Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52610Os.8714.1.S1_at11/112+32173486..32181532Galactoside 2-alpha-L-fucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47727.1.S1_s_at--1018--9051Chr02:32149708..32149732 (25 bp)
TGCATCACCTTTGGGCAGGTCGCTG
LOC_Os02g52550
Os.47727.1.S1_s_at--1034--8251Chr02:32149721..32149745 (25 bp)
GGCAGGTCGCTGACATCGTGGACAA
LOC_Os02g52550
Os.47727.1.S1_s_at--305--5671Chr02:32149732..32149756 (25 bp)
GACATCGTGGACAAGGGCACCTGCC
LOC_Os02g52550
Os.47727.1.S1_s_at--130--7331Chr02:32149923..32149947 (25 bp)
GTGCTTCTACCGGTCCAAGATGAGG
LOC_Os02g52550
Os.47727.1.S1_s_at--998--6291Chr02:32149941..32149965 (25 bp)
GATGAGGGCTCAGTTCGACCTGGAC
LOC_Os02g52550
Os.47727.1.S1_s_at--1072--9291Chr02:32150252..32150276 (25 bp)
TCCCGGTCGGCATGATGAGGTAGAC
LOC_Os02g52550
Os.47727.1.S1_s_at--860--7411Chr02:32150316..32150340 (25 bp)
GTGTTGCAATATGTTCTCTGTGGTT
LOC_Os02g52550
Os.47727.1.S1_s_at--1031--7871Chr02:32150337..32150361 (25 bp)
GGTTTTCATTTGGAGATCACTGCCT
LOC_Os02g52550
Os.47727.1.S1_s_at--1087--371Chr02:32150352..32150376 (25 bp)
ATCACTGCCTATTTCATGTATCGTA
LOC_Os02g52550
Os.47727.1.S1_s_at--1066--6891Chr02:32150369..32150393 (25 bp)
GTATCGTATACTCCTATTTAGCTTG
LOC_Os02g52550
Os.47727.1.S1_s_at--1022--8931Chr02:32150418..32150442 (25 bp)
TGACGCATTCAGAAGTGTTGTGACT
LOC_Os02g52550
Target Sequence 
TGCATCACCTTTGGGCAGGTCGCTGACATCGTGGACAAGGGCACCTGCCCATGCCTCGCGAGCGGGACGGCTTACGCGCT
CCTCTGCGCGTCGGGGATGGGGTGCCTGTACTCGTGCTTCTACCGGTCCAAGATGAGGGCTCAGTTCGACCTGGACGAAG
GGGATTGCCCCGATTTCCTCGTCCNATTTCTGCTGCGAGTACTGCGCGCTGTGCCAGGAGTACCGGGAGCTCAAGAACCG
CGGCTTCGACTTGGGGATCGGTTGGGCTGCCAATGTGGACAGGCAGAGGCGAGGCGTCACCGGAGCGTCGGTGATGGGAG
CTCCTGGCGTCCCGGTCGGCATGATGAGGTAGACGAAGATGGCGAACGCGAAATGGNGCGCTTTTGTGTTCTTNGTGTTG
CAATATGTTCTCTGTGGTTTTCATTTGGAGATCACTGCCTATTTCATGTATCGTATACTCCTATTTAGCTTGATTTGTTG
GGTTTCATGTAATATATGACGCATTCAGAAGTGTTGTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47727.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis