Browse Element(s) Details


Os.27450.1.S1_at

Description gb:CB673031
DB_XREF= gi:29676756
DB_XREF=OSJNEe07F19.r
CLONE=OSJNEe07F19
TID=Os.27450.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27450 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:S71195 (A.thaliana) S71195 myosin heavy chain homolog - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1481010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14770Os.9720.1.S1_at11/118+8873567..8881798aminotransferase class III family protein, putative, expressed
LOC_Os08g14780OsAffx.29202.1.S1_at11/118+8882972..8884610hypothetical protein
LOC_Os08g14780Os.50047.1.S1_at1/118+8882972..8884610hypothetical protein
LOC_Os08g14790OsAffx.17001.1.S1_at11/118+8889031..8889450hypothetical protein
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein
LOC_Os08g14810Os.27450.1.S1_at10/118+8897977..8902457NB-ARC domain containing protein, expressed
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein
LOC_Os08g14830OsAffx.29205.1.S1_at11/118+8916550..8920029NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27450.1.S1_at--1128--8311Chr08:8898432..8898456 (25 bp)
GGCTCAGGCACCATGGATGTACAAT
LOC_Os08g14810
Os.27450.1.S1_at--241--1371Chr08:8898399..8898423 (25 bp)
AGAGCACTTGCTTCCGCTCAAAAAG
LOC_Os08g14810
Os.27450.1.S1_at--1117--10571Chr08:8898335..8898359 (25 bp)
TTCTCTCTGACGTCGTTGGATTCAA
LOC_Os08g14810
Os.27450.1.S1_at--606--10311Chr08:8898237..8898261 (25 bp)
TTTCTACTGAGATACCTGGGCCTTA
LOC_Os08g14810
Os.27450.1.S1_at--58--1451Chr08:8898141..8898165 (25 bp)
AGAACCCGCGTGAAACAGTTGCCTG
LOC_Os08g14810
Os.27450.1.S1_at--1128--3431Chr08:8898126..8898150 (25 bp)
CAGTTGCCTGTATCCGTGAATGAGC
LOC_Os08g14810
Os.27450.1.S1_at--190--5611Chr08:8898097..8898121 (25 bp)
GAAATTGGTGTTCCTCCTGGGAGAT
LOC_Os08g14810
Os.27450.1.S1_at--1059--2111Chr08:8898061..8898085 (25 bp)
ACAGGCTGGTATGACGGCTATGCAA
LOC_Os08g14810
Os.27450.1.S1_at--692--6011Chr08:8898003..8898027 (25 bp)
GAGAGAAGCTCACTCGACATGGTCT
LOC_Os08g14810
Os.27450.1.S1_at--455--5651Chr08:8897988..8898012 (25 bp)
GACATGGTCTCAGAGCTGCTAGTTA
LOC_Os08g14810
Os.27450.1.S1_at--321--7598Chr08:10178036..10178060 (25 bp)
GGGCATGCACCGTACGTAGGATAAA
NONE
Target Sequence 
GGCTCAGGCACCATGGATGTACAATCCATAAACAGAGCACTTGCTTCCGCTCAAAAAGGGAAAATTAGATCACTTGCTTT
TCTCGGGAATTCGAGGCTTCTCTCTGACGTCGTTGGATTCAAGCTTTTGAGGGTGTTGGATCTGGAAGATTGTAAGAGCT
TGGGAAACGAGCATGTCCAAAAGATCCGGAGTTTGTTTCTACTGAGATACCTGGGCCTTAGAGGGACCGGTGTCACCGAG
CTCCAAGAAGACATTGGAGAACTCCATGAGTTGCAGACCATAGATGTGAGGAGAACCCGCGTGAAACAGTTGCCTGTATC
CGTGAATGAGCTAAAGAAATTGGTGTTCCTCCTGGGAGATGGTTTGCAAGCACAGGCTGGTATGACGGCTATGCAAAACC
TGGAGGAAGTATCGACGATCGATGTCAGTGAGAGAAGCTCACTCGACATGGTCTCAGAGCTGCTAGTTAAGTCGAACTAG
GAAGGTAGCCCGCGCATACGAGCGGGCATGCACCGTACGTAGGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis