Browse Element(s) Details


OsAffx.29205.1.S1_at

Description tigr:9636.m01484
TID=OsAffx.29205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1483011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein
LOC_Os08g14810Os.27450.1.S1_at10/118+8897977..8902457NB-ARC domain containing protein, expressed
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein
LOC_Os08g14830OsAffx.29205.1.S1_at11/118+8916550..8920029NB-ARC domain containing protein
LOC_Os08g14840OsAffx.29206.1.S1_at11/118+8928261..8928875hypothetical protein
LOC_Os08g14850Os.53682.1.S1_at11/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14850Os.39960.1.S1_at1/118+8933157..8946745NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29205.1.S1_at--41--5831Chr08:8917121..8917145 (25 bp)
GACCCCTTGAATCCTTGTCAATTGA
LOC_Os08g14830
OsAffx.29205.1.S1_at--738--291Chr08:8917080..8917104 (25 bp)
ATAGACTTCCTTGGTGATCTGGCGC
LOC_Os08g14830
OsAffx.29205.1.S1_at--743--3731Chr08:8916975..8916999 (25 bp)
CTAAGGGAGCTGCACCTTTGGTCAA
LOC_Os08g14830
OsAffx.29205.1.S1_at--444--2431Chr08:8916917..8916941 (25 bp)
AAAACCTGCCTTACCTTGTCTATCT
LOC_Os08g14830
OsAffx.29205.1.S1_at--544--8531Chr08:8916864..8916888 (25 bp)
TGGAGCGACACCTTTGCTGTGCAGA
LOC_Os08g14830
OsAffx.29205.1.S1_at--386--1371Chr08:8916842..8916866 (25 bp)
AGAGCGGCGGATTCCCAAGTCTTCG
LOC_Os08g14830
OsAffx.29205.1.S1_at--20--6871Chr08:8916780..8916804 (25 bp)
GTATTCGAACAAGGATCCATGCCCG
LOC_Os08g14830
OsAffx.29205.1.S1_at--136--4051Chr08:8916748..8916772 (25 bp)
CGATCTTCACCTGCTTTGTCCAGAA
LOC_Os08g14830
OsAffx.29205.1.S1_at--36--6871Chr08:8916663..8916687 (25 bp)
GTTTGGCACATCGAAAACCTCGTCA
LOC_Os08g14830
OsAffx.29205.1.S1_at--164--7031Chr08:8916642..8916666 (25 bp)
GTCAGTCTTAACGACGTGGTACTCC
LOC_Os08g14830
OsAffx.29205.1.S1_at--670--8591Chr08:8916626..8916650 (25 bp)
TGGTACTCCATCATTCTGCTAGTGA
LOC_Os08g14830
Target Sequence 
GACCCCTTGAATCCTTGTCAATTGACTTCGGCGATCTCTCCATAGACTTCCTTGGTGATCTGGCGCCGCCCTGTGCCCTC
GAGTCCCTCAAGTTGCGAGGGGCTATGAGCAGCTTGCCTGCCTTCTTCACATCACCGGAGAATCAACTAAGGGAGCTGCA
CCTTTGGTCAACTGGATTGAGCGGGGAAGCCCTCTCTGCCCTACAAAACCTGCCTTACCTTGTCTATCTGACGCTAAAAG
AGGACCGTCGTGGATTTTGGAGCGACACCTTTGCTGTGCAGAGCGGCGGATTCCCAAGTCTTCGGCGGCTGCGCTTTCAG
GCCGCCATGCTTCCAAAAGTAGTATTCGAACAAGGATCCATGCCCGATCTCGCCGATCTTCACCTGCTTTGTCCAGAAAT
TTGCAGCTCCATTTTTTTCTATCGTTCTTTCGATATGCCAAGGAATCTAAGGCTTGGTGTTTGGCACATCGAAAACCTCG
TCAGTCTTAACGACGTGGTACTCCATCATTCTGCTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis