Browse Element(s) Details


OsAffx.29204.1.S1_at

Description tigr:9636.m01483
TID=OsAffx.29204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1482010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14790OsAffx.17001.1.S1_at11/118+8889031..8889450hypothetical protein
LOC_Os08g14800OsAffx.29203.5.S1_at11/118+8893643..8895728hypothetical protein
LOC_Os08g14810Os.27450.1.S1_at10/118+8897977..8902457NB-ARC domain containing protein, expressed
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein
LOC_Os08g14830OsAffx.29205.1.S1_at11/118+8916550..8920029NB-ARC domain containing protein
LOC_Os08g14840OsAffx.29206.1.S1_at11/118+8928261..8928875hypothetical protein
LOC_Os08g14850Os.53682.1.S1_at11/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14850Os.39960.1.S1_at1/118+8933157..8946745NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29204.1.S1_at--930--1751Chr08:8913239..8913263 (25 bp)
ACCTCGACCTCACTGGTGACCAGGA
LOC_Os08g14820
OsAffx.29204.1.S1_at--857--3331Chr08:8913229..8913253 (25 bp)
CACTGGTGACCAGGAGATGCAAGCC
LOC_Os08g14820
OsAffx.29204.1.S1_at--746--3731Chr08:8913195..8913219 (25 bp)
CTCAAGGACTGGATTTGTTGGAGGT
LOC_Os08g14820
OsAffx.29204.1.S1_at--121--8431Chr08:8913160..8913184 (25 bp)
GGCCTTTGGCCAATTCTTGAAACCA
LOC_Os08g14820
OsAffx.29204.1.S1_at--625--8451Chr08:8913153..8913177 (25 bp)
GGCCAATTCTTGAAACCATTAGAGT
LOC_Os08g14820
OsAffx.29204.1.S1_at--612--9691Chr08:8913126..8913150 (25 bp)
TCAAAATGTCGGTTAAGTCCCTTGG
LOC_Os08g14820
OsAffx.29204.1.S1_at--98--3291Chr08:8913087..8913111 (25 bp)
CAAAGCCGAAGGATGAGGACCACTG
LOC_Os08g14820
OsAffx.29204.1.S1_at--911--991Chr08:8913078..8913102 (25 bp)
AGGATGAGGACCACTGGGTTTGCCA
LOC_Os08g14820
OsAffx.29204.1.S1_at--60--4431Chr08:8913057..8913081 (25 bp)
GCCATCAAGTTTGGGCGAAGCCAGG
LOC_Os08g14820
OsAffx.29204.1.S1_at--731--8371NONE
GGCGAAGCCAGGTATGTCCCGAAAT
NONE
OsAffx.29204.1.S1_at--1123--10091Chr08:8912305..8912329 (25 bp)
TATGTCCCGAAATTATCCCTACCAA
LOC_Os08g14820
Target Sequence 
ACCTCGACCTCACTGGTGACCAGGAGATGCAAGCCTACCGGATGCTCAAGGACTGGATTTGTTGGAGGTATGTCACGAGG
GCCTTTGGCCAATTCTTGAAACCATTAGAGTTATCAAAATGTCGGTTAAGTCCCTTGGGCGAAGCCGTTGGGCAAAGCCG
AAGGATGAGGACCACTGGGTTTGCCATCAAGTTTGGGCGAAGCCAGGTATGTCCCGAAATTATCCCTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis