Browse Element(s) Details


Os.55288.1.S1_at

Description gb:AK107804.1
DB_XREF= gi:32993013
TID=Os.55288.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-E06, full insert sequence.
FL= gb:AK107804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4800011/11expressed protein
LOC_Os08g147101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55288.1.S1_at--339--3491Chr05:27437974..27437998 (25 bp)
CAGGCTGGCCGCTGGCAACATCAAA
LOC_Os05g48000
Os.55288.1.S1_at--799--8071Chr05:27438003..27438027 (25 bp)
GGAGCTTTTTCATTGTTTGCTTGAG
LOC_Os05g48000
Os.55288.1.S1_at--383--9051Chr05:27438020..27438044 (25 bp)
TGCTTGAGTGCCTGGCCGGGTAAAT
LOC_Os05g48000
Os.55288.1.S1_at--1061--4472Chr05:27438034..27438058 (25 bp)
GCCGGGTAAATCCATGCTCTTTGAA
LOC_Os05g48000
Os.55288.1.S1_at--686--191Chr05:27438060..27438084 (25 bp)
ATTTCTTGCTTGAATCTGTTGGGCC
LOC_Os05g48000
Os.55288.1.S1_at--895--9471Chr05:27438074..27438098 (25 bp)
TCTGTTGGGCCTTTCTTGTTTTTCT
LOC_Os05g48000
Os.55288.1.S1_at--754--8574Chr08:794094..794118 (25 bp)
TGGTTACTGGTTAGTGCGGCTGCTA
NONE
Os.55288.1.S1_at--266--1137Chr08:794106..794130 (25 bp)
AGTGCGGCTGCTAATGTTGATGCAA
NONE
Os.55288.1.S1_at--782--6813Chr12:2258869..2258893 (25 bp)
GTTTTTGGGATCTTAATCGCTTGTT
NONE
Os.55288.1.S1_at--335--8055Chr08:794230..794254 (25 bp)
GGAATCGGCTACACTAATACTAGTA
NONE
Os.55288.1.S1_at--87--9272Chr05:27438482..27438506 (25 bp)
TCCGGAAAATGTCGTATCCCCGTAT
LOC_Os05g48000
Target Sequence 
CAGGCTGGCCGCTGGCAACATCAAAGCAAGGAGCTTTTTCATTGTTTGCTTGAGTGCCTGGCCGGGTAAATCCATGCTCT
TTGAACATTTCTTGCTTGAATCTGTTGGGCCTTTCTTGTTTTTCTTAGGACAAAGTACTATCGTTTTTGTTAGATACAAG
TGCTAGTGCATCTAGCAATTCTAGTGGTTACTGGTTAGTGCGGCTGCTAATGTTGATGCAAAGTCATCAAGAGTTATATG
ATTGAACTATTAATATGTAGTTTTTGGGATCTTAATCGCTTGTTAATTTGAATTGCTTATAGAAAAGAAAATTGCAAAAT
ATTGATATGGAATCGGCTACACTAATACTAGTATTATATCGCTTTTTCTTTATAAAAGCTCCTTATTTTTTTTGTATTTT
TAATATATATTAATGTAATTTCCTTAATTTTTTTTGTGTGTTTTCAATATATATATATATATATATATACGTATCCCCGT
ATCCTTGTTTTTTTTGGAAAATGTCGTATCCGGAAAATGTCGTATCCCCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis