Browse Element(s) Details


Os.54133.1.S1_at

Description gb:AK102095.1
DB_XREF= gi:32987304
TID=Os.54133.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083E22, full insert sequence.
FL= gb:AK102095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4797010/11Microtubule associated protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47940OsAffx.4649.1.S1_x_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47940OsAffx.4649.1.S1_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54133.1.S1_at--704--8811Chr05:27422200..27422224 (25 bp)
TGTTGGTCTCCCTATCAGGAAGTTA
LOC_Os05g47970
Os.54133.1.S1_at--1094--5331Chr05:27422182..27422206 (25 bp)
GAAGTTATTTCCATCTTCCAACTCG
LOC_Os05g47970
Os.54133.1.S1_at--904--2751Chr05:27422037..27422061 (25 bp)
AAGACATTTGCACCAGTTCCTACGA
LOC_Os05g47970
Os.54133.1.S1_at--326--6691Chr05:27422022..27422046 (25 bp)
GTTCCTACGACTCCGATGACAGTGA
LOC_Os05g47970
Os.54133.1.S1_at--1141--2291Chr05:27421985..27422009 (25 bp)
AAATGGCAGTGACGCCTGTTCTTAC
LOC_Os05g47970
Os.54133.1.S1_at--1025--8931Chr05:27421933..27421957 (25 bp)
TGACGAACCGGAGCTGACTTCACAA
LOC_Os05g47970
Os.54133.1.S1_at--235--5031Chr05:27421751..27421775 (25 bp)
GCAGTCGGCCTTATTCATAACCATA
LOC_Os05g47970
Os.54133.1.S1_at--867--3551Chr05:27421730..27421754 (25 bp)
CATACTTTACGTTTTCATCCCATTG
LOC_Os05g47970
Os.54133.1.S1_at--806--6931Chr05:27421700..27421724 (25 bp)
GTAGTTACCTTGTTACTGCTGGCAC
LOC_Os05g47970
Os.54133.1.S1_at--424--9131Chr05:27421684..27421708 (25 bp)
TGCTGGCACTTGTCACCTGATGATG
LOC_Os05g47970
Os.54133.1.S1_at--177--6271Chr05:27421663..27421687 (25 bp)
GATGTGAACCATTACCTTTCTTCGC
NONE
Target Sequence 
TGTTGGTCTCCCTATCAGGAAGTTATTTCCATCTTCCAACTCGAGCACTCTTCTTGAGATGGAGACACCCCGGAAGCCCT
TCTCTCAGATTACACCTGGAAACATATCCTCAGCTCCTGTGCGTCCAATCTCCACTGGTGGTACTGAAGAGAACAGGACT
CCCAAGACATTTGCACCAGTTCCTACGACTCCGATGACAGTGAGCCCTCATATGCAAATGGCAGTGACGCCTGTTCTTAC
CGCAAAAGCTGTTTCTGTACTCTCTTATGACGAACCGGAGCTGACTTCACAAGAGGACACCGAGTACTCATTTGAAGAGA
AGCGTCTTGCAGTCTATCTTGCCGCACAAGTGGCTTGACTGTCAAGGATGCTGATACATCCGTTGTGTAGCTGAAAGTCT
GAACCTTTGATAGCATTTCTCATGTTACAGAGACTTGTGTAGGTCGACAGCAGTCGGCCTTATTCATAACCATACTTTAC
GTTTTCATCCCATTGTTAAAGTAGTTACCTTGTTACTGCTGGCACTTGTCACCTGATGATGTGAACCATTACCTTTCTTC
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis