Browse Element(s) Details


Os.55729.1.S1_at

Description gb:AK108674.1
DB_XREF= gi:32993883
TID=Os.55729.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H12, full insert sequence.
FL= gb:AK108674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4795011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47890Os.8991.1.S1_at11/115+27376091..27378590Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os05g47900Os.55141.1.S1_at11/115+27379989..27382026Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g47910NANA5+27382768..27383739retrotransposon protein, putative, unclassified
LOC_Os05g47920Os.46785.2.S1_x_at2/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.30226.2.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47920OsAffx.442.1.S1_x_at1/115+27384318..27390180retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g47930Os.12118.1.A1_a_at11/115+27390831..27395793thiol oxidoreductase, putative, expressed
LOC_Os05g47940OsAffx.4649.1.S1_x_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47940OsAffx.4649.1.S1_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55729.1.S1_at--651--6691Chr05:27403025..27403049 (25 bp)
GTTCGCGAACGCCAAGTTCTTGGTG
LOC_Os05g47950
Os.55729.1.S1_at--925--10611Chr05:27402842..27402866 (25 bp)
TTCGTCGGATCGGAGCCTCCAGGAT
LOC_Os05g47950
Os.55729.1.S1_at--1134--4271Chr05:27402827..27402851 (25 bp)
CCTCCAGGATTTTGTCGACCATGTA
LOC_Os05g47950
Os.55729.1.S1_at--557--9371Chr05:27402813..27402837 (25 bp)
TCGACCATGTACGACGTTCCAAAGG
LOC_Os05g47950
Os.55729.1.S1_at--1126--1571Chr05:27402776..27402800 (25 bp)
AGCTCGATTAGCTCAAGACATCCAG
LOC_Os05g47950
Os.55729.1.S1_at--390--4351Chr05:27402755..27402779 (25 bp)
CCAGATTATGAATGGGCCGGTCAAT
LOC_Os05g47950
Os.55729.1.S1_at--992--2251Chr05:27402714..27402738 (25 bp)
AAATCTAGCACAGCCCATGTACGGT
LOC_Os05g47950
Os.55729.1.S1_at--335--10071Chr05:27402666..27402690 (25 bp)
TAGTGTGTTAATCTATCTACTCCAT
LOC_Os05g47950
Os.55729.1.S1_at--45--451Chr05:27402652..27402676 (25 bp)
ATCTACTCCATTAAGTTGCTGTCGA
LOC_Os05g47950
Os.55729.1.S1_at--51--9131Chr05:27402636..27402660 (25 bp)
TGCTGTCGAGTCTAATCCTTGTTAT
LOC_Os05g47950
Os.55729.1.S1_at--472--8971Chr05:27402555..27402579 (25 bp)
TGAACACTCCAAGTCAAACACGATT
LOC_Os05g47950
Target Sequence 
GTTCGCGAACGCCAAGTTCTTGGTGGAGGACTACAAGGTCGGCGTCCGGCTACCGGCGCCGGTGACCGGCGGCGAGCTCC
GAGCGTGCGTCGACCGCGTGATGAGCGGGCCGGAGGCGGCGGTGATCCGGAAGAGGGCGATGCATTGGAAGCGAGAAGCG
GCGGCGGCGGTTGCCGACGGCGGTTCGTCGGATCGGAGCCTCCAGGATTTTGTCGACCATGTACGACGTTCCAAAGGACC
GGAGGAGCTAGCTCGATTAGCTCAAGACATCCAGATTATGAATGGGCCGGTCAATCCGGTCCTAGTTTAATAAATCTAGC
ACAGCCCATGTACGGTCATGTGGGGGCTATGACGCTATGTAGTGTGTTAATCTATCTACTCCATTAAGTTGCTGTCGAGT
CTAATCCTTGTTATCATAGGATTCCAAGGCTTACATAAAAAAACGGTGTAAAAAATGTAAGTTTGAAGTTTGAACACTCC
AAGTCAAACACGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis