Browse Element(s) Details


Os.54375.1.S1_at

Description gb:AK103746.1
DB_XREF= gi:32988955
TID=Os.54375.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033138P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138P03, full insert sequence.
FL= gb:AK103746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4803011/11Anti-silencing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os05g48060Os.54269.1.S1_s_at11/115+27469321..27474965Phosphatidyl serine synthase family protein, expressed
LOC_Os05g48070Os.9498.1.S1_at11/115+27475473..27479753expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54375.1.S1_at--1116--2831Chr05:27454010..27454034 (25 bp)
AAGTAAGCCCGCTGCTGATCAATGA
LOC_Os05g48030
Os.54375.1.S1_at--633--631Chr05:27454046..27454070 (25 bp)
ATGCTAACATTTTGATGCCCGTGCC
LOC_Os05g48030
Os.54375.1.S1_at--65--611Chr05:27454060..27454084 (25 bp)
ATGCCCGTGCCTTTTAGGATATCTT
LOC_Os05g48030
Os.54375.1.S1_at--467--7411Chr05:27454102..27454126 (25 bp)
GTGATTATGCTTCTTCATTCTCCTA
LOC_Os05g48030
Os.54375.1.S1_at--707--3591Chr05:27454117..27454141 (25 bp)
CATTCTCCTAGGTTTGTCATTGGTG
LOC_Os05g48030
Os.54375.1.S1_at--634--7911Chr05:27454182..27454206 (25 bp)
GGTTGCTGAAAACTGTATGTTCTCT
LOC_Os05g48030
Os.54375.1.S1_at--901--6711Chr05:27454200..27454224 (25 bp)
GTTCTCTTGAAATCTGCCAATCTGG
LOC_Os05g48030
Os.54375.1.S1_at--523--3051Chr05:27454218..27454242 (25 bp)
AATCTGGTTAAGAGTACTTGCGCAA
LOC_Os05g48030
Os.54375.1.S1_at--247--2071Chr05:27454233..27454257 (25 bp)
ACTTGCGCAAGTTCTGTTTCATCAA
LOC_Os05g48030
Os.54375.1.S1_at--790--2271Chr05:27454256..27454280 (25 bp)
AAATGCTGGATGCTTCTTTTGTCTA
LOC_Os05g48030
Os.54375.1.S1_at--256--7991Chr05:27454263..27454287 (25 bp)
GGATGCTTCTTTTGTCTAGACTATA
LOC_Os05g48030
Target Sequence 
AAGTAAGCCCGCTGCTGATCAATGATCAGAGTGGGGATGCTAACATTTTGATGCCCGTGCCTTTTAGGATATCTTGTGAT
GCTGTGAGAGTGGTGATTATGCTTCTTCATTCTCCTAGGTTTGTCATTGGTGTCTCGTCTTTTGGAAGGCAAATTGTTCC
CTAGTTCCTGGTGGTTGCTGAAAACTGTATGTTCTCTTGAAATCTGCCAATCTGGTTAAGAGTACTTGCGCAAGTTCTGT
TTCATCAAATGCTGGATGCTTCTTTTGTCTAGACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis