Browse Element(s) Details


Os.53508.1.S1_at

Description gb:AK073023.1
DB_XREF= gi:32983046
TID=Os.53508.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53508 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000J03, full insert sequence.
FL= gb:AK101756.1 gb:AK073023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4805011/11Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os05g48060Os.54269.1.S1_s_at11/115+27469321..27474965Phosphatidyl serine synthase family protein, expressed
LOC_Os05g48070Os.9498.1.S1_at11/115+27475473..27479753expressed protein
LOC_Os05g48090NANA5+27483657..27486961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48100NANA5+27488546..27491031transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53508.1.S1_at--1--7791Chr05:27464857..27464881 (25 bp)
GGTGCCAAGGTCGTCATGGACTGAT
LOC_Os05g48050
Os.53508.1.S1_at--474--5731Chr05:27464839..27464863 (25 bp)
GACTGATCAGCATCCTCATTTCAAT
LOC_Os05g48050
Os.53508.1.S1_at--798--6811Chr05:27464195..27464219 (25 bp)
GTTTTTAACTGTGCTTTCTCATGGT
LOC_Os05g48050
Os.53508.1.S1_at--508--7711Chr05:27464150..27464174 (25 bp)
GGGTGCCAGTGTTAATATCCTGTCA
LOC_Os05g48050
Os.53508.1.S1_at--1117--2451Chr05:27464095..27464119 (25 bp)
AACACACTGGCCAATCCGATGGTGC
LOC_Os05g48050
Os.53508.1.S1_at--1070--3551Chr05:27464070..27464094 (25 bp)
CATCATGTGTTTCTTGTTCGGTCGA
LOC_Os05g48050
Os.53508.1.S1_at--389--10771Chr05:27463962..27463986 (25 bp)
TTGAGCCTGGAGTACTATCTTTTTT
LOC_Os05g48050
Os.53508.1.S1_at--667--10151Chr05:27463947..27463971 (25 bp)
TATCTTTTTTGGTTGGCTTCACCGG
LOC_Os05g48050
Os.53508.1.S1_at--1018--4891Chr05:27463932..27463956 (25 bp)
GCTTCACCGGCTGTATATGTATCTC
LOC_Os05g48050
Os.53508.1.S1_at--547--8911Chr05:27463882..27463906 (25 bp)
TGAGCTAGATGCACGCTGTGGCGTT
LOC_Os05g48050
Os.53508.1.S1_at--1067--8352Chr04:16040663..16040684 (22 bp)
GGCGTTCAAGTTTTTATCCTCTGCA
NONE
Target Sequence 
GGTGCCAAGGTCGTCATGGACTGATCAGCATCCTCATTTCAATTTTCAAGGTTCTGTTCACAGTTTTTAACTGTGCTTTC
TCATGGTTTGATGGTTGATGCGGATTGGGGTGCCAGTGTTAATATCCTGTCAATTGGCATTTTGAAAGCCCAATGATCTT
ACAACACACTGGCCAATCCGATGGTGCCATCATGTGTTTCTTGTTCGGTCGATGAATTCTCTGTCACTAACAAGAAACAT
GGAATAATTTCTGTTGAAAAATGAGATCAACAGGGNGCAGAGCTGGAGTGTGACATTGAGCCTGGAGTACTATCTTTTTT
GGTTGGCTTCACCGGCTGTATATGTATCTCATTTTTGTAATGTTACTGAAGCTACTGAGCTAGATGCACGCTGTGGCGTT
CAAGTTTTTATCCTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis