Browse Element(s) Details


Os.11344.1.S1_s_at

Description gb:AK073902.1
DB_XREF= gi:32983925
TID=Os.11344.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071I17, full insert sequence.
FL= gb:AK073902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4804011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48040Os.32283.1.S1_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48040Os.11344.1.S1_s_at11/115+27458858..27462800MATE efflux family protein, expressed
LOC_Os05g48050Os.53508.1.S1_at11/115+27463712..27465515Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os05g48060Os.54269.1.S1_s_at11/115+27469321..27474965Phosphatidyl serine synthase family protein, expressed
LOC_Os05g48070Os.9498.1.S1_at11/115+27475473..27479753expressed protein
LOC_Os05g48090NANA5+27483657..27486961transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11344.1.S1_s_at--816--5051Chr05:27461985..27462009 (25 bp)
GCAGCACCTGGGAGCCTATGTAAAC
LOC_Os05g48040
Os.11344.1.S1_s_at--1073--7031Chr05:27462004..27462028 (25 bp)
GTAAACCTCGGTTCATTCTACCTGG
LOC_Os05g48040
Os.11344.1.S1_s_at--1045--111Chr05:27462018..27462042 (25 bp)
ATTCTACCTGGTTGGCATTCCGGTA
LOC_Os05g48040
Os.11344.1.S1_s_at--412--531Chr05:27462097..27462121 (25 bp)
ATCGCCTGTGGTTCCGTATTACAAT
LOC_Os05g48040
Os.11344.1.S1_s_at--956--6871Chr05:27462112..27462136 (25 bp)
GTATTACAATTCTTGCTTCTCGCCG
LOC_Os05g48040
Os.11344.1.S1_s_at--63--9331Chr05:27462131..27462155 (25 bp)
TCGCCGTCATTGCATTCTTCAGCAA
LOC_Os05g48040
Os.11344.1.S1_s_at--509--5211Chr05:27462300..27462324 (25 bp)
GAATTTTCGGCGAGACACCGTCAGA
LOC_Os05g48040
Os.11344.1.S1_s_at--612--7311Chr05:27462338..27462362 (25 bp)
GTGCTTGATGCAACGAATTCGGTCT
LOC_Os05g48040
Os.11344.1.S1_s_at--440--8831Chr05:27462362..27462386 (25 bp)
TGATTCTGCATCCTGATCCGTTGAC
LOC_Os05g48040
Os.11344.1.S1_s_at--718--1951Chr05:27462423..27462447 (25 bp)
ACTGGCTCCTCTGGATGTGTAGGGA
LOC_Os05g48040
Os.11344.1.S1_s_at--925--6691Chr05:27462567..27462591 (25 bp)
GTTCCGAATACTTCCAGCCTATAGA
LOC_Os05g48040
Target Sequence 
GCAGCACCTGGGAGCCTATGTAAACCTCGGTTCATTCTACCTGGTTGGCATTCCGGTAGCCCTACTTCTTGGCTTTGGTT
TCAAGATGGAAGGCAAAGGGCTTTGGCTGGGCATCGCCTGTGGTTCCGTATTACAATTCTTGCTTCTCGCCGTCATTGCA
TTCTTCAGCAACTGGCAAAAGATGGCCGAGAAAGCGAGGGAGAGAATTTTCGGCGAGACACCGTCAGAGAAGCAACATTT
GGTGCTTGATGCAACGAATTCGGTCTGATTCTGCATCCTGATCCGTTGACGCGAACTGAAGCGGATGATCGGATCATGTG
GAGGAGACTGGCTCCTCTGGATGTGTAGGGAATCTGCTGAAGAAGTAAAGCAGTGTGCATAGTTGTACTGTTGCATTTGT
TGGATCCGGGAGAATGTATCAAGAACTCTATGTGAAATGTATGATGGCGATATGTATGTACGAGATCGAGGTTCCGAATA
CTTCCAGCCTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11344.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis