Browse Element(s) Details


Os.36736.1.S1_at

Description gb:AK062778.1
DB_XREF= gi:32972796
TID=Os.36736.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A11, full insert sequence.
FL= gb:AK062778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g061001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g146901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g218401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g06059OsAffx.15464.1.S1_at3/114+3134792..3135505NA
LOC_Os04g06059OsAffx.15464.1.S1_x_at3/114+3134792..3135505NA
LOC_Os04g06070NANA4+3138073..3144763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06080OsAffx.22947.1.S1_x_at1/114+3145048..3149481retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06090NANA4+3152352..3154027receptor protein kinase, putative
LOC_Os04g06100Os.36736.1.S1_x_at1/114+3154460..3157526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06100Os.45976.1.S1_x_at1/114+3154460..3157526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06100Os.36736.1.S1_at1/114+3154460..3157526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g06110NANA4+3159409..3163929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06120NANA4+3169003..3170205retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06130Os.8606.1.S1_at1/114+3171738..3179221retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06130OsAffx.22947.1.S1_x_at1/114+3171738..3179221retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06144OsAffx.8299.1.A1_x_at1/114+3180606..3193224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g06144OsAffx.8299.1.A1_at1/114+3180606..3193224retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36736.1.S1_at--1051--7631Chr11:23539910..23539934 (25 bp)
GGGAGGAGGGATCCCGCTCCAGTTC
NONE
Os.36736.1.S1_at--809--9931Chr11:23539953..23539977 (25 bp)
TACGTGCCCTTGCTCCGGCCAGAGG
NONE
Os.36736.1.S1_at--416--7531Chr11:23540024..23540048 (25 bp)
GGGCAGCCCTAGCTCGATCCGCGGA
NONE
Os.36736.1.S1_at--439--1591Chr11:23540081..23540105 (25 bp)
AGCTCGGCCGCATCACGGATGACCG
NONE
Os.36736.1.S1_at--430--4971Chr11:23540090..23540114 (25 bp)
GCATCACGGATGACCGCCGCGGCTG
NONE
Os.36736.1.S1_at--521--4591NONE
GCGAATCAGTCAGAGCCCGAGGGAG
NONE
Os.36736.1.S1_at--911--7632Chr11:23542426..23542450 (25 bp)
GGGAGTTACGGATCCAAGCAAGGAC
NONE
Os.36736.1.S1_at--339--6771Chr11:23542430..23542454 (25 bp)
GTTACGGATCCAAGCAAGGACCAAG
NONE
Os.36736.1.S1_at--906--552Chr12:2407884..2408081 (25 bp)
ATCCAAGCAAGGACCAAGAACCGCA
NONE
Os.36736.1.S1_at--23--14948Chr12:6131853..6131873 (21 bp)
AGCAAGAGGTCGGAGATGAAGCTTC
NONE
Os.36736.1.S1_at--694--36119Chr12:18873502..18873526 (25 bp)
CTTGATATTTCAGCTATGAGTTCGT
NONE
Target Sequence 
GGGAGGAGGGATCCCGCTCCAGTTCCGGCCATCACTCTCGCCGTACGTGCCCTTGCTCCGGCCAGAGGGGCTCCCCTCGC
AGAGGCTTCTTCTCCGGGGGCCACCTTCCGTCGGGGGCAGCCCTAGCTCGATCCGCGGACGGAGCAGAGGCAGCGCGGCG
CGGNGCGGCGCAGCTCGGCCGCATCACGGATGACCGCCGCGGCTGCCATTCCGGGGCGGCGAATCAGTCAGAGCCCGAGG
GAGTTACGGATCCAAGCAAGGACCAAGAACCGCAAGACTTTGAGCAAGAGGTCGGAGATGAAGCTTCGGAGAATCCCTAC
GCTTACTACCAGGAGGGTGATGAAGACGATGGCGCCCAGTAGGTCTTAGTTACGGTCGTTGCCTGTGGCAATGGAGTGCC
GCTGCCTTAACTCCGCTGCCTTACCTACTTCTGTTTTTGGAATGTATTCCGGACCGCTCGGTCCGATGATTTAAGACTGT
GCCTGCGGGCTTATGATGTAATAATTCGTACTAGACTCTCGTGTATGTGCACTTGATATTTCAGCTATGAGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis