Browse Element(s) Details


OsAffx.15464.1.S1_x_at

Description tigr:9634.m01707
TID=OsAffx.15464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1695010/11hypothetical protein
LOC_Os04g060593/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16900Os.47463.1.S1_x_at6/116+9796426..9800779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16900Os.14491.2.S1_x_at5/116+9796426..9800779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16909NANA6+9802891..9803400NA
LOC_Os06g16920NANA6+9807459..9807935expressed protein
LOC_Os06g16930Os.2987.3.S1_x_at2/116+9812601..9813413retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16940NANA6+9815571..9817613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16950OsAffx.15464.1.S1_x_at10/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.15464.1.S1_at9/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.2606.1.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.32163.2.S1_at2/116+9821442..9823910hypothetical protein
LOC_Os06g16950OsAffx.8939.1.S1_x_at1/116+9821442..9823910hypothetical protein
LOC_Os06g16960OsAffx.27680.1.S1_at10/116+9831188..9833592O-methyltransferase family protein
LOC_Os06g16970OsAffx.4855.1.S1_at11/116+9836651..9837052hypothetical protein
LOC_Os06g16980Os.20056.1.A1_at11/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980OsAffx.24454.2.S1_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980Os.7779.1.S2_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15464.1.S1_x_at--1099--377Chr08:11331982..11332274 (25 bp)
ATCAAAGCAGAGTAGGCATAGCCGA
NONE
OsAffx.15464.1.S1_x_at--566--1335Chr08:6709007..6709031 (25 bp)
AGAGTAGGCATAGCCGAAGAGGCAT
NONE
OsAffx.15464.1.S1_x_at--809--3555Chr08:6709004..6709023 (20 bp)
CATAGCCGAAGAGGCATGGTTTGAT
NONE
OsAffx.15464.1.S1_x_at--516--6851Chr06:9823385..9823409 (25 bp)
GTTTGATGAAGATGACGGTGTCGTT
LOC_Os06g16950
OsAffx.15464.1.S1_x_at--505--6471NONE
GATAACGATGAGTATGTCTTGCATT
NONE
OsAffx.15464.1.S1_x_at--126--7151Chr06:9821576..9821600 (25 bp)
GTCTTGCATTGTTTTGGTGATGACG
LOC_Os06g16950
OsAffx.15464.1.S1_x_at--493--3231Chr06:9821544..9821568 (25 bp)
CAAGATACTTCGACGGTGCAAAGAT
LOC_Os06g16950
OsAffx.15464.1.S1_x_at--359--6471Chr06:9821541..9821565 (25 bp)
GATACTTCGACGGTGCAAAGATGCA
LOC_Os06g16950
OsAffx.15464.1.S1_x_at--537--3291Chr06:9821526..9821550 (25 bp)
CAAAGATGCAATACCTACTAGAGAT
LOC_Os06g16950
OsAffx.15464.1.S1_x_at--469--3571Chr06:9821475..9821499 (25 bp)
CATAGTGGTTGGATCAGGCTCGCAG
LOC_Os06g16950
OsAffx.15464.1.S1_x_at--719--271Chr06:9821474..9821498 (25 bp)
ATAGTGGTTGGATCAGGCTCGCAGA
LOC_Os06g16950
Target Sequence 
ATCAAAGCAGAGTAGGCATAGCCGAAGAGGCATGGTTTGATGAAGATGACGGTGTCGTTGATCCAGTCAATAGCAGTGTA
GTAGTCAATGATAACGATGAGTATGTCTTGCATTGTTTTGGTGATGACGATTGTGTCAAGATACTTCGACGGTGCAAAGA
TGCAATACCTACTAGAGATGCTGGAGGAAAGGTGATAATCATAAACATAGTGGTTGGATCAGGCTCGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15464.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis