Browse Element(s) Details


OsAffx.32163.2.S1_at

Description tigr:9640.m04209
TID=OsAffx.32163.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4282011/11hypothetical protein
LOC_Os06g169502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42770OsAffx.7871.1.S1_x_at10/1112+26550292..26551574hypothetical protein
LOC_Os12g42770OsAffx.7871.1.S1_at8/1112+26550292..26551574hypothetical protein
LOC_Os12g42770Os.26789.1.A1_at1/1112+26550292..26551574hypothetical protein
LOC_Os12g42780NANA12+26553621..26553929hypothetical protein
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42830OsAffx.32163.1.S1_at10/1112+26580135..26583625hypothetical protein
LOC_Os12g42830OsAffx.32163.2.S1_x_at4/1112+26580135..26583625hypothetical protein
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007065biological_processmale meiosis sister chromatid cohesion
GO:0007066biological_processfemale meiosis sister chromatid cohesion
GO:0007131biological_processmeiotic recombination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32163.2.S1_at--1030--5311Chr12:26577143..26577165 (23 bp)
GAAGTCCTACAATACATGTCAGGGT
LOC_Os12g42820
OsAffx.32163.2.S1_at--1116--7251Chr12:26577146..26577627 (25 bp)
GTCCTACAATACATGTCAGGGTGGG
LOC_Os12g42820
OsAffx.32163.2.S1_at--510--9973Chr12:26577870..26577894 (25 bp)
TACCTTGACCGGATCTCGATCCGTG
LOC_Os12g42820
OsAffx.32163.2.S1_at--849--10751Chr12:26577874..26577898 (25 bp)
TTGACCGGATCTCGATCCGTGCCTT
LOC_Os12g42820
OsAffx.32163.2.S1_at--754--63732Chr12:26577887..26577911 (25 bp)
GATCCGTGCCTTCGCCCGGAAGCTA
LOC_Os12g42820
OsAffx.32163.2.S1_at--825--10638Chr12:26577897..26577921 (25 bp)
TTCGCCCGGAAGCTAAGCCGCAGCT
LOC_Os12g42820
OsAffx.32163.2.S1_at--1114--4533Chr12:26577900..26577924 (25 bp)
GCCCGGAAGCTAAGCCGCAGCTCGT
LOC_Os12g42820
OsAffx.32163.2.S1_at--562--5394Chr12:26577905..26577929 (25 bp)
GAAGCTAAGCCGCAGCTCGTCCTTG
LOC_Os12g42820
OsAffx.32163.2.S1_at--936--1574Chr12:26577907..26577931 (25 bp)
AGCTAAGCCGCAGCTCGTCCTTGAG
LOC_Os12g42820
OsAffx.32163.2.S1_at--354--3732Chr12:26577909..26577933 (25 bp)
CTAAGCCGCAGCTCGTCCTTGAGCG
LOC_Os12g42820
OsAffx.32163.2.S1_at--1134--7256Chr12:26577923..26577947 (25 bp)
GTCCTTGAGCGGGACCCAGCGCCGT
LOC_Os12g42820
Target Sequence 
GAAGTCCTACAATACATGTCAGGGTGGGGACCCACCCTACCTTGACCGGATCTCGATCCGTGCCTTCGCCCGGAAGCTAA
GCCGCAGCTCGTCCTTGAGCGGGACCCAGCGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32163.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis