Browse Element(s) Details


OsAffx.32163.1.S1_at

Description tigr:9640.m04210
TID=OsAffx.32163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SWITCH1 splice variant S
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4283010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42830OsAffx.32163.1.S1_at10/1112+26580135..26583625hypothetical protein
LOC_Os12g42830OsAffx.32163.2.S1_x_at4/1112+26580135..26583625hypothetical protein
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007065biological_processmale meiosis sister chromatid cohesion
GO:0007066biological_processfemale meiosis sister chromatid cohesion
GO:0007131biological_processmeiotic recombination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32163.1.S1_at--635--8071Chr12:26582867..26582891 (25 bp)
GGAGCACCAGCTGACTGCTTTATCC
LOC_Os12g42830
OsAffx.32163.1.S1_at--643--1971Chr12:26582880..26582904 (25 bp)
ACTGCTTTATCCACTTCTTTCCTGT
LOC_Os12g42830
OsAffx.32163.1.S1_at--719--9551Chr12:26582895..26583077 (25 bp)
TCTTTCCTGTCTCTAAAGGAGGAAC
LOC_Os12g42830
OsAffx.32163.1.S1_at--781--2311NONE
AAAGGAGGAACTGCTCTGGCTGGAA
NONE
OsAffx.32163.1.S1_at--404--4751Chr12:26583101..26583125 (25 bp)
GCTGATCTGTATGTCAAGGAACCAT
LOC_Os12g42830
OsAffx.32163.1.S1_at--421--2911Chr12:26583116..26583140 (25 bp)
AAGGAACCATGGGAAGACGACGATG
LOC_Os12g42830
OsAffx.32163.1.S1_at--649--2371Chr12:26583141..26583165 (25 bp)
AAAAGCAAGAACACGATGCCGGGAA
LOC_Os12g42830
OsAffx.32163.1.S1_at--1050--7091Chr12:26583194..26583218 (25 bp)
GTCAGTGCAGCCAACGACCAGCCGG
LOC_Os12g42830
OsAffx.32163.1.S1_at--844--2491Chr12:26583283..26583307 (25 bp)
AACATCGAGGAAGTGCAGCGTGCGC
LOC_Os12g42830
OsAffx.32163.1.S1_at--781--8191Chr12:26583291..26583315 (25 bp)
GGAAGTGCAGCGTGCGCATCTCCAA
LOC_Os12g42830
OsAffx.32163.1.S1_at--567--1711Chr12:26583437..26583461 (25 bp)
ACCATGGACGAGCTCTACGAGTACA
LOC_Os12g42830
Target Sequence 
GGAGCACCAGCTGACTGCTTTATCCACTTCTTTCCTGTCTCTAAAGGAGGAACTGCTCTGGCTGGAAAAAGAAGAAGCTG
ATCTGTATGTCAAGGAACCATGGGAAGACGACGATGAAAAGCAAGAACACGATGCCGGGAAAGAGGCGAAGGACGACGAT
GTCGCCGGCGTCAGTGCAGCCAACGACCAGCCGGACGTCGACGGCGATGGCACCACCACCACCACCACCACCAGCAGCAA
TGGTGGCAGCGGGAAGAGAACATCGAGGAAGTGCAGCGTGCGCATCTCCAAGCCGCAGGGCGCGTTCCAGTGGCCGACGC
CGAGCCTGCCGTTCTCGCCGGAGCTCGCCGCGCCGCCGTCGCCGCCGCTGACCCCGACGGCGCCCGTCGTCGCCGGCGCC
GCCAACTTCGCCACCATGGACGAGCTCTACGAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis