Browse Element(s) Details


OsAffx.20093.1.S1_at

Description tigr:9640.m04211
TID=OsAffx.20093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4284010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42830OsAffx.32163.1.S1_at10/1112+26580135..26583625hypothetical protein
LOC_Os12g42830OsAffx.32163.2.S1_x_at4/1112+26580135..26583625hypothetical protein
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20093.1.S1_at--784--9931Chr12:26585120..26585245 (25 bp)
TACGTGCCACCCGACGAGGAGGCGA
LOC_Os12g42840
OsAffx.20093.1.S1_at--275--31Chr12:26585264..26585288 (25 bp)
ATTGGGATGTCGAGAAGCTTCCCGG
LOC_Os12g42840
OsAffx.20093.1.S1_at--61--2591Chr12:26585316..26585340 (25 bp)
AACGAGTTCAGTGCTGAGGTCCAGT
LOC_Os12g42840
OsAffx.20093.1.S1_at--671--6311Chr12:26585356..26585380 (25 bp)
GATGACGATGCATTGTATCCTTATG
LOC_Os12g42840
OsAffx.20093.1.S1_at--270--571NONE
ATCCTTATGTTTGTGGTTTATCTGG
NONE
OsAffx.20093.1.S1_at--828--10451Chr12:26586570..26586594 (25 bp)
TTACCTCCGTACATGAAGACTCTTG
LOC_Os12g42840
OsAffx.20093.1.S1_at--310--5371Chr12:26586584..26586606 (23 bp)
GAAGACTCTTGCAACATGGGAGGAA
LOC_Os12g42840
OsAffx.20093.1.S1_at--565--9831Chr12:26586843..26586867 (25 bp)
TAAACTCATACTTCAGCAGTGACAA
LOC_Os12g42840
OsAffx.20093.1.S1_at--13--5031Chr12:26586858..26586882 (25 bp)
GCAGTGACAAAACTCAGGGCAATGT
LOC_Os12g42840
OsAffx.20093.1.S1_at--758--1291Chr12:26587153..26587177 (25 bp)
AGATCCTACTTGTTGATCCTTCTGC
LOC_Os12g42840
OsAffx.20093.1.S1_at--521--6371Chr12:26587167..26587191 (25 bp)
GATCCTTCTGCGGATGAATCAGTTG
LOC_Os12g42840
Target Sequence 
TACGTGCCACCCGACGAGGAGGCGAGCGAGGATGTGGAGGAAGATTGGGATGTCGAGAAGCTTCCCGGGGTCGCTGGGAA
TGGGTGCTTTGGTGGAACGAGTTCAGTGCTGAGGTCCAGTAGAGAGATGGTGGATGATGACGATGCATTGTATCCTTATG
TTTGTGGTTTATCTGGAAGCACAGAGATACTTTACAGGAAACCTGAAAGTGTTGCTGATGTTGAAAACAAAGTAAATGAT
GCCGAATCCATGATTCCCCCGAAAGAAACAAATGGTCAAGGTAATGATGCACAAGGAGCCATAAAGGCATCCAAGGAGGA
GTATGAGAAATTACCTCCGTACATGAAGACTCTTGCAACATGGGAGGAATTGCAGGAGGCAATATCGAAATTAAACTCAT
ACTTCAGCAGTGACAAAACTCAGGGCAATGTTGCATTGAATCAAGATGATGTTGGAGAGATTGGATTGGGGCGCAAAGGA
AGATCCTACTTGTTGATCCTTCTGCGGATGAATCAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis