Browse Element(s) Details


Os.8576.1.S1_at

Description gb:AK099628.1
DB_XREF= gi:32984837
TID=Os.8576.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055O18, full insert sequence.
FL= gb:AK099628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4286011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42830OsAffx.32163.1.S1_at10/1112+26580135..26583625hypothetical protein
LOC_Os12g42830OsAffx.32163.2.S1_x_at4/1112+26580135..26583625hypothetical protein
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8576.1.S1_at--953--531Chr12:26596874..26596898 (25 bp)
ATCGCCTCTCATGGCTAACGGAGAC
LOC_Os12g42860
Os.8576.1.S1_at--604--9791Chr12:26596859..26596883 (25 bp)
TAACGGAGACCATTCCGCGGATGCT
LOC_Os12g42860
Os.8576.1.S1_at--706--6411Chr12:26596801..26596825 (25 bp)
GATCTCCGATGACGAATGACCGCCG
LOC_Os12g42860
Os.8576.1.S1_at--528--8811Chr12:26596755..26596779 (25 bp)
TGATATTCCGACATGGACGGCCAGC
LOC_Os12g42860
Os.8576.1.S1_at--1126--3031Chr12:26596721..26596745 (25 bp)
AATCCGTCGACGTCTAACCATGTAG
LOC_Os12g42860
Os.8576.1.S1_at--263--6351Chr12:26596624..26596648 (25 bp)
GATGCTGTCTTTCAGTCTCAGTGAT
LOC_Os12g42860
Os.8576.1.S1_at--1052--3451Chr12:26596606..26596630 (25 bp)
CAGTGATGCCCTTTTCTTAATCTTT
LOC_Os12g42860
Os.8576.1.S1_at--954--6931Chr12:26596576..26596600 (25 bp)
GTAGTTCGTTCAGTACTTCAGTACA
LOC_Os12g42860
Os.8576.1.S1_at--632--6911Chr12:26596550..26596574 (25 bp)
GTATGCGTAGACTCCAATATTTCAG
LOC_Os12g42860
Os.8576.1.S1_at--88--731Chr12:26596523..26596547 (25 bp)
ATGTTGGATGCCCTTTTTGTATTGA
LOC_Os12g42860
Os.8576.1.S1_at--663--2413Chr12:26596361..26596385 (25 bp)
AACTACTCCCTCATTTCCAAATTGA
LOC_Os12g42860
Target Sequence 
ATCGCCTCTCATGGCTAACGGAGACCATTCCGCGGATGCTGAGGATGCGCCAGATCCGGTACGGCGGCCCGCCGATCTCC
GATGACGAATGACCGCCGGCTTGTCCNGATCTGAAAGAGTGATATTCCGACATGGACGGCCAGCCCAGCTGTGAATCCGT
CGACGTCTAACCATGTAGTAGACAGCAGATAGCCATAGATGCAAANGCGAATCAATNCATGNCAGAGTTGAGCTTTCAGT
TCTTGCATGCCTGATGCTGTCTTTCAGTCTCAGTGATGCCCTTTTCTTAATCTTTGGNCNAGTAGTTCGTTCAGTACTTC
AGTACATGTATGCGTAGACTCCAATATTTCAGTTATGTTGGATGCCCTTTTTGTATTGAAAAGTAAGAATCGATCTATTG
GGGTTAAAATGTAAGGGAGTAAATTTAGACATTCTCTCTCTTCTTTTAATTTTTCAGAATTGTAAAGTATATGGTTGGGA
TACGACTGATAAACCGTATAACTTTTCTAAGAAGGCAACTACTCCCTCATTTCCAAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis