Browse Element(s) Details


OsAffx.32163.2.S1_x_at

Description tigr:9640.m04209
TID=OsAffx.32163.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4282011/11hypothetical protein
LOC_Os12g428304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42770OsAffx.7871.1.S1_x_at10/1112+26550292..26551574hypothetical protein
LOC_Os12g42770OsAffx.7871.1.S1_at8/1112+26550292..26551574hypothetical protein
LOC_Os12g42770Os.26789.1.A1_at1/1112+26550292..26551574hypothetical protein
LOC_Os12g42780NANA12+26553621..26553929hypothetical protein
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42830OsAffx.32163.1.S1_at10/1112+26580135..26583625hypothetical protein
LOC_Os12g42830OsAffx.32163.2.S1_x_at4/1112+26580135..26583625hypothetical protein
LOC_Os12g42840OsAffx.20093.1.S1_at10/1112+26584635..26587248expressed protein
LOC_Os12g42850Os.28192.1.S1_at10/1112+26587604..26592491amino acid permease family protein, putative, expressed
LOC_Os12g42860Os.8576.1.S1_at11/1112+26596321..26599020expressed protein
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007065biological_processmale meiosis sister chromatid cohesion
GO:0007066biological_processfemale meiosis sister chromatid cohesion
GO:0007131biological_processmeiotic recombination
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32163.2.S1_x_at--542--8012Chr12:26580818..26580842 (25 bp)
GGAGGCGTCGCTGCTCGCCATCATG
LOC_Os12g42830
OsAffx.32163.2.S1_x_at--857--932Chr12:26580945..26580969 (25 bp)
AGGCACATCGCCGACAAGGTGGCGC
LOC_Os12g42830
OsAffx.32163.2.S1_x_at--664--1952Chr12:26581084..26581108 (25 bp)
ACTGGGTGCCTCCTCCCGGATGGAA
LOC_Os12g42830
OsAffx.32163.2.S1_x_at--172--5912Chr12:26581179..26581199 (21 bp)
GAGCTCGCCGGCGTCAGAAGGCACA
LOC_Os12g42830
OsAffx.32163.2.S1_x_at--465--1471Chr12:26577077..26577099 (23 bp)
AGAAGGCACATGGATCACCTCACTT
LOC_Os12g42820
OsAffx.32163.2.S1_x_at--436--831Chr12:26577084..26577108 (25 bp)
ATGGATCACCTCACTTCCAATGTGA
LOC_Os12g42820
OsAffx.32163.2.S1_x_at--808--2251Chr12:26577129..26577153 (25 bp)
AAATCTGAGGCTGAGAAGTCCTACA
LOC_Os12g42820
OsAffx.32163.2.S1_x_at--1031--5311Chr12:26577143..26577165 (23 bp)
GAAGTCCTACAATACATGTCAGGGT
LOC_Os12g42820
OsAffx.32163.2.S1_x_at--509--9973Chr12:26577870..26577894 (25 bp)
TACCTTGACCGGATCTCGATCCGTG
LOC_Os12g42820
OsAffx.32163.2.S1_x_at--755--63732Chr12:26577887..26577911 (25 bp)
GATCCGTGCCTTCGCCCGGAAGCTA
LOC_Os12g42820
OsAffx.32163.2.S1_x_at--264--2694Chr12:26577906..26577930 (25 bp)
AAGCTAAGCCGCAGCTCGTCCTTGA
LOC_Os12g42820
Target Sequence 
GGAGGCGTCGCTGCTCGCCATCATGCGCGCCCACGGCGCGCGCGCCGGGAAGCCCGTCCCGCGCGCGGCGCTGCGGGAGG
AGGCGCGCGCCCACATCGGCGACACGGGCCTCCTCGACCACCTCCTCAGGCACATCGCCGACAAGGTGGCGCCCGGCGGC
GCCGAGCGGTTCCGGCGGCGGCACAACGCCGGCGGCGGGCTGGAGTACTGGCTGGAGCCCGCCGAGCTCGCCGCCGTGCG
GCGGAAGGCCGGCGTGGCCGACCCGTACTGGGTGCCTCCTCCCGGATGGAAGCCAGGGGACCCCGTGTCGCCGGAGGGCT
ACTTGCTGGAGGTGAGGAAGCAGGTGGAGCAGCTCGCCGTTGAGCTCGCCGGCGTCAGAAGGCACATGGATCACCTCACT
TCCAATGTGAGTCAAGTGGGCAAGGAAATCAAATCTGAGGCTGAGAAGTCCTACAATACATGTCAGGGTGGGGACCCACC
CTACCTTGACCGGATCTCGATCCGTGCCTTCGCCCGGAAGCTAAGCCGCAGCTCGTCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32163.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis